Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00000133 |
| length | 719 |
| lncRNA type | retained_intron |
| GC content | 0.47 |
| exon number | 8 |
| gene id | XLOC_000067 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 6161930 ~ 6185532 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0000079 | regulation of cyclin-dependent protein serine/threonine kinase activity | biological_process |
| GO:0000307 | cyclin-dependent protein kinase holoenzyme complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0016538 | cyclin-dependent protein serine/threonine kinase regulator activity | molecular_function |
| GO:0019901 | protein kinase binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-091204-419 | Predicted to enable AMP binding activity; protein kinase binding activity; and protein kinase regulator activity. Predicted to be involved in cellular response to glucose starvation; protein phosphorylation; and regulation of catalytic activity. Predicted to be part of nucleotide-activated protein kinase complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human PRKAG3 (protein kinase AMP-activated non-catalytic subunit gamma 3). |
| ensembl_id | ENSDART00000132675 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00000128 | lncRNA | upstream | 6930 | 6162013 ~ 6166554 (+) | False | XLOC_000067 |
| TCONS_00003020 | lncRNA | upstream | 374392 | 5795013 ~ 5799092 (+) | False | XLOC_000065 |
| TCONS_00003021 | lncRNA | upstream | 374392 | 5795035 ~ 5799092 (+) | True | XLOC_000065 |
| TCONS_00003019 | lncRNA | upstream | 444800 | 5706970 ~ 5728684 (+) | True | XLOC_000064 |
| TCONS_00003017 | lncRNA | upstream | 859889 | 5311479 ~ 5313595 (+) | True | XLOC_000059 |
| TCONS_00000135 | lncRNA | downstream | 2788 | 6182344 ~ 6185532 (+) | True | XLOC_000067 |
| TCONS_00000137 | lncRNA | downstream | 10441 | 6189997 ~ 6196763 (+) | False | XLOC_000068 |
| TCONS_00003022 | lncRNA | downstream | 200322 | 6379878 ~ 6554470 (+) | True | XLOC_000072 |
| TCONS_00003023 | lncRNA | downstream | 218654 | 6398210 ~ 6403223 (+) | True | XLOC_000073 |
| TCONS_00000148 | lncRNA | downstream | 485477 | 6665033 ~ 6668339 (+) | True | XLOC_000076 |
| TCONS_00000129 | mRNA | upstream | 1156 | 6162090 ~ 6172328 (+) | False | XLOC_000067 |
| TCONS_00000127 | mRNA | upstream | 3667 | 6161930 ~ 6169817 (+) | False | XLOC_000067 |
| TCONS_00000125 | mRNA | upstream | 14875 | 6135176 ~ 6158609 (+) | False | XLOC_000066 |
| TCONS_00000126 | mRNA | upstream | 14875 | 6135188 ~ 6158609 (+) | True | XLOC_000066 |
| TCONS_00000124 | mRNA | upstream | 585909 | 5576151 ~ 5587575 (+) | True | XLOC_000063 |
| TCONS_00000136 | mRNA | downstream | 10393 | 6189949 ~ 6210718 (+) | False | XLOC_000068 |
| TCONS_00000138 | mRNA | downstream | 27394 | 6206950 ~ 6210718 (+) | True | XLOC_000068 |
| TCONS_00000139 | mRNA | downstream | 45937 | 6225493 ~ 6240518 (+) | False | XLOC_000069 |
| TCONS_00000140 | mRNA | downstream | 46579 | 6226135 ~ 6243978 (+) | False | XLOC_000069 |
| TCONS_00000141 | mRNA | downstream | 64350 | 6243906 ~ 6272146 (+) | True | XLOC_000069 |
| TCONS_00000123 | other | upstream | 671400 | 5497285 ~ 5502084 (+) | True | XLOC_000062 |
| TCONS_00000120 | other | upstream | 686322 | 5437390 ~ 5487162 (+) | False | XLOC_000062 |
| TCONS_00000121 | other | upstream | 723040 | 5438743 ~ 5450444 (+) | False | XLOC_000062 |
| TCONS_00000117 | other | upstream | 754977 | 5402534 ~ 5418507 (+) | True | XLOC_000060 |
| TCONS_00000111 | other | upstream | 2413450 | 3759924 ~ 3760034 (+) | True | XLOC_000054 |
| TCONS_00000134 | other | downstream | 2786 | 6182342 ~ 6185532 (+) | False | XLOC_000067 |
| TCONS_00000149 | other | downstream | 608134 | 6787690 ~ 6787804 (+) | True | XLOC_000078 |
| TCONS_00000154 | other | downstream | 884281 | 7063837 ~ 7063943 (+) | True | XLOC_000081 |
| TCONS_00000208 | other | downstream | 2974538 | 9154094 ~ 9155273 (+) | False | XLOC_000113 |
| TCONS_00000209 | other | downstream | 2975437 | 9154993 ~ 9155521 (+) | False | XLOC_000113 |
