RNA id: TU253909


Basic Information

Item Value
RNA id TU253909
length 405
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G223843
representative True

Chromosome Information

Item Value
chromosome id CI01000052
NCBI id null
chromosome length 3494004
location 2361044 ~ 2361448 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCACATCAAAGATGTTCCATCTGCAGAATGACATTTAACTTAAAGGGGGGGAGGTGTCACAGACAGTACAAAATGTTCTTTCTCCATCAGCTAAACCCCTTCAACAAGCCTCTATCCATTGAGGTGAGAGCTCACCTGCATTTCCACAGAGACATCCAGCAAGTCAATGGGCTCCCAAGGGCCTCGAAGCCAACTGAGAATGAGCCCCATGGCAACACAGACCTGACACTCCAGTAATCTCAACCCTTAAACTGACACTCACTGCGTGTATGTTCCTTTCTCACTCGCCCTGCCCTGTGCTGCTCTCAGTGTGTGGAAGCACTTGCGATGTCTGTGAAAGGACAGGAGAGGCTGAAGCAAAGCTCACAGGAAAAGAAGGGTGAGCTTTAAGGGCTTGGCACAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253900 lncRNA upstream 34226 2326583 ~ 2326818 (+) True G223834
TU253865 lncRNA upstream 40448 2319661 ~ 2320596 (+) True G223807
TU253867 lncRNA upstream 41055 2315719 ~ 2319989 (+) False G223807
TU253894 lncRNA upstream 63183 2297629 ~ 2297861 (+) True G223829
TU253893 lncRNA upstream 65734 2294958 ~ 2295310 (+) True G223828
TU253857 lncRNA downstream 10253 2371701 ~ 2371846 (+) True G223801
TU253863 lncRNA downstream 49860 2411308 ~ 2414717 (+) True G223806
TU253868 lncRNA downstream 53719 2415167 ~ 2415889 (+) True G223808
TU253924 lncRNA downstream 147691 2509139 ~ 2509435 (+) True G223858
TU253929 lncRNA downstream 155151 2516599 ~ 2516889 (+) True G223863
CI01000052_02310477_02312424.mRNA mRNA upstream 48137 2309879 ~ 2312907 (+) True CI01000052_02310477_02312424
CI01000052_02182830_02186951.mRNA mRNA upstream 173866 2181940 ~ 2187178 (+) True CI01000052_02182830_02186951
CI01000052_02167466_02172193.mRNA mRNA upstream 188008 2166584 ~ 2173036 (+) True CI01000052_02167466_02172193
CI01000052_02120654_02122805.mRNA mRNA upstream 237784 2120360 ~ 2123260 (+) True CI01000052_02120654_02122805
CI01000052_02077422_02080093.mRNA mRNA upstream 280709 2077422 ~ 2080335 (+) True CI01000052_02077422_02080093
CI01000052_02374792_02389760.mRNA mRNA downstream 13264 2374712 ~ 2390103 (+) False CI01000052_02374792_02389760
CI01000052_02397395_02408461.mRNA mRNA downstream 35947 2397395 ~ 2408539 (+) False CI01000052_02397395_02408461
CI01000052_02417407_02438433.mRNA mRNA downstream 55924 2417372 ~ 2438924 (+) True CI01000052_02417407_02438433
CI01000052_02439580_02463549.mRNA mRNA downstream 78132 2439580 ~ 2465673 (+) True CI01000052_02439580_02463549
CI01000052_02468269_02501109.mRNA mRNA downstream 106821 2468269 ~ 2501174 (+) True CI01000052_02468269_02501109
TU253739 other upstream 256745 2049326 ~ 2104299 (+) False G223694
TU253734 other upstream 256745 2098540 ~ 2104299 (+) False G223694
TU253572 other upstream 1090117 1270492 ~ 1270927 (+) True G223545
TU255127 other downstream 1069688 3431136 ~ 3460136 (+) True G224953

Expression Profile