Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU253868 |
| length | 723 |
| lncRNA type | inter_gene |
| GC content | 0.35 |
| exon number | 1 |
| gene id | G223808 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000052 |
| NCBI id | null |
| chromosome length | 3494004 |
| location | 2415167 ~ 2415889 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU253863 | lncRNA | upstream | 450 | 2411308 ~ 2414717 (+) | True | G223806 |
| TU253857 | lncRNA | upstream | 8812 | 2371701 ~ 2371846 (+) | True | G223801 |
| TU253909 | lncRNA | upstream | 53719 | 2361044 ~ 2361448 (+) | True | G223843 |
| TU253900 | lncRNA | upstream | 88349 | 2326583 ~ 2326818 (+) | True | G223834 |
| TU253865 | lncRNA | upstream | 94571 | 2319661 ~ 2320596 (+) | True | G223807 |
| TU253924 | lncRNA | downstream | 93250 | 2509139 ~ 2509435 (+) | True | G223858 |
| TU253929 | lncRNA | downstream | 100710 | 2516599 ~ 2516889 (+) | True | G223863 |
| TU253930 | lncRNA | downstream | 101589 | 2517478 ~ 2518007 (+) | True | G223864 |
| TU253931 | lncRNA | downstream | 103515 | 2519404 ~ 2519641 (+) | True | G223865 |
| TU253933 | lncRNA | downstream | 104313 | 2520202 ~ 2525774 (+) | True | G223866 |
| CI01000052_02397395_02408461.mRNA | mRNA | upstream | 6628 | 2397395 ~ 2408539 (+) | False | CI01000052_02397395_02408461 |
| CI01000052_02374792_02389760.mRNA | mRNA | upstream | 25064 | 2374712 ~ 2390103 (+) | False | CI01000052_02374792_02389760 |
| CI01000052_02310477_02312424.mRNA | mRNA | upstream | 102260 | 2309879 ~ 2312907 (+) | True | CI01000052_02310477_02312424 |
| CI01000052_02182830_02186951.mRNA | mRNA | upstream | 227989 | 2181940 ~ 2187178 (+) | True | CI01000052_02182830_02186951 |
| CI01000052_02167466_02172193.mRNA | mRNA | upstream | 242131 | 2166584 ~ 2173036 (+) | True | CI01000052_02167466_02172193 |
| CI01000052_02417407_02438433.mRNA | mRNA | downstream | 1483 | 2417372 ~ 2438924 (+) | True | CI01000052_02417407_02438433 |
| CI01000052_02439580_02463549.mRNA | mRNA | downstream | 23691 | 2439580 ~ 2465673 (+) | True | CI01000052_02439580_02463549 |
| CI01000052_02468269_02501109.mRNA | mRNA | downstream | 52380 | 2468269 ~ 2501174 (+) | True | CI01000052_02468269_02501109 |
| CI01000052_02591303_02592790.mRNA | mRNA | downstream | 172970 | 2588859 ~ 2592797 (+) | True | CI01000052_02591303_02592790 |
| CI01000052_02597704_02601005.mRNA | mRNA | downstream | 181667 | 2597556 ~ 2601852 (+) | True | CI01000052_02597704_02601005 |
| TU253739 | other | upstream | 310868 | 2049326 ~ 2104299 (+) | False | G223694 |
| TU253734 | other | upstream | 310868 | 2098540 ~ 2104299 (+) | False | G223694 |
| TU253572 | other | upstream | 1144240 | 1270492 ~ 1270927 (+) | True | G223545 |
| TU255127 | other | downstream | 1015247 | 3431136 ~ 3460136 (+) | True | G224953 |
