RNA id: TU253929


Basic Information

Item Value
RNA id TU253929
length 291
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G223863
representative True

Chromosome Information

Item Value
chromosome id CI01000052
NCBI id null
chromosome length 3494004
location 2516599 ~ 2516889 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCAAACCTGTTGGTGCTTGTTACACTCTTATTTCATGTAGTTACAGGGTAACTGTTAAGTAATTAAAAAAACCCCGCAAACAATCTGTTATCACTCGGAAACCTTTATTTGAAAAACAACTTATTTCAAAACAGATTTAAAGTTACAACACTTCTTATTCGTTTCTCTTGCTCGGCTACCTCCTCCTCTTGTTCCTCTTCTTCTTTTTCTTTCTTTCCACTGATGAATCTTAAGAGGGAATCCCATGTCATTTGCTATTCTGTATTAAAAGAAAATACAGTACACCCGGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253924 lncRNA upstream 7164 2509139 ~ 2509435 (+) True G223858
TU253868 lncRNA upstream 100710 2415167 ~ 2415889 (+) True G223808
TU253863 lncRNA upstream 101882 2411308 ~ 2414717 (+) True G223806
TU253857 lncRNA upstream 110244 2371701 ~ 2371846 (+) True G223801
TU253909 lncRNA upstream 155151 2361044 ~ 2361448 (+) True G223843
TU253930 lncRNA downstream 589 2517478 ~ 2518007 (+) True G223864
TU253931 lncRNA downstream 2515 2519404 ~ 2519641 (+) True G223865
TU253933 lncRNA downstream 3313 2520202 ~ 2525774 (+) True G223866
TU253935 lncRNA downstream 24318 2541207 ~ 2638623 (+) True G223868
TU254059 lncRNA downstream 298192 2815081 ~ 2815308 (+) True G223986
CI01000052_02468269_02501109.mRNA mRNA upstream 15425 2468269 ~ 2501174 (+) True CI01000052_02468269_02501109
CI01000052_02439580_02463549.mRNA mRNA upstream 50926 2439580 ~ 2465673 (+) True CI01000052_02439580_02463549
CI01000052_02417407_02438433.mRNA mRNA upstream 77675 2417372 ~ 2438924 (+) True CI01000052_02417407_02438433
CI01000052_02397395_02408461.mRNA mRNA upstream 108060 2397395 ~ 2408539 (+) False CI01000052_02397395_02408461
CI01000052_02374792_02389760.mRNA mRNA upstream 126496 2374712 ~ 2390103 (+) False CI01000052_02374792_02389760
CI01000052_02591303_02592790.mRNA mRNA downstream 71970 2588859 ~ 2592797 (+) True CI01000052_02591303_02592790
CI01000052_02597704_02601005.mRNA mRNA downstream 80667 2597556 ~ 2601852 (+) True CI01000052_02597704_02601005
CI01000052_02622010_02627854.mRNA mRNA downstream 103352 2620241 ~ 2628310 (+) False CI01000052_02622010_02627854
CI01000052_02646977_02647792.mRNA mRNA downstream 129334 2646223 ~ 2647824 (+) True CI01000052_02646977_02647792
CI01000052_02845585_02849894.mRNA mRNA downstream 328661 2845550 ~ 2849978 (+) True CI01000052_02845585_02849894
TU253739 other upstream 412300 2049326 ~ 2104299 (+) False G223694
TU253734 other upstream 412300 2098540 ~ 2104299 (+) False G223694
TU253572 other upstream 1245672 1270492 ~ 1270927 (+) True G223545
TU255127 other downstream 914247 3431136 ~ 3460136 (+) True G224953

Expression Profile