RNA id: TU253931


Basic Information

Item Value
RNA id TU253931
length 238
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G223865
representative True

Chromosome Information

Item Value
chromosome id CI01000052
NCBI id null
chromosome length 3494004
location 2519404 ~ 2519641 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGACACGTTTTTACAGTGGAACCTGCTATGACGTCAAAACAGTGCGTTATATGCTTTTCAACAAATGTAAACAGTAAACACAAAAAATTGTGACAGTATATCCTAATGTGATTTTTTCGTGTTTGAAAGCAGCATGCTAAACCACTGCTACAGGAAAAAGCAGTATTTAAAACCAAACAATTTTTCTTCAAGCTGCCAATTCCAAGTGGAAGTGCAGCAAGAACATTTTTCTTTTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253930 lncRNA upstream 1397 2517478 ~ 2518007 (+) True G223864
TU253929 lncRNA upstream 2515 2516599 ~ 2516889 (+) True G223863
TU253924 lncRNA upstream 9969 2509139 ~ 2509435 (+) True G223858
TU253868 lncRNA upstream 103515 2415167 ~ 2415889 (+) True G223808
TU253863 lncRNA upstream 104687 2411308 ~ 2414717 (+) True G223806
TU253933 lncRNA downstream 561 2520202 ~ 2525774 (+) True G223866
TU253935 lncRNA downstream 21566 2541207 ~ 2638623 (+) True G223868
TU254059 lncRNA downstream 295440 2815081 ~ 2815308 (+) True G223986
TU254063 lncRNA downstream 300827 2820468 ~ 2820698 (+) True G223990
TU254068 lncRNA downstream 304899 2824540 ~ 2824758 (+) True G223995
CI01000052_02468269_02501109.mRNA mRNA upstream 18230 2468269 ~ 2501174 (+) True CI01000052_02468269_02501109
CI01000052_02439580_02463549.mRNA mRNA upstream 53731 2439580 ~ 2465673 (+) True CI01000052_02439580_02463549
CI01000052_02417407_02438433.mRNA mRNA upstream 80480 2417372 ~ 2438924 (+) True CI01000052_02417407_02438433
CI01000052_02397395_02408461.mRNA mRNA upstream 110865 2397395 ~ 2408539 (+) False CI01000052_02397395_02408461
CI01000052_02374792_02389760.mRNA mRNA upstream 129301 2374712 ~ 2390103 (+) False CI01000052_02374792_02389760
CI01000052_02591303_02592790.mRNA mRNA downstream 69218 2588859 ~ 2592797 (+) True CI01000052_02591303_02592790
CI01000052_02597704_02601005.mRNA mRNA downstream 77915 2597556 ~ 2601852 (+) True CI01000052_02597704_02601005
CI01000052_02622010_02627854.mRNA mRNA downstream 100600 2620241 ~ 2628310 (+) False CI01000052_02622010_02627854
CI01000052_02646977_02647792.mRNA mRNA downstream 126582 2646223 ~ 2647824 (+) True CI01000052_02646977_02647792
CI01000052_02845585_02849894.mRNA mRNA downstream 325909 2845550 ~ 2849978 (+) True CI01000052_02845585_02849894
TU253739 other upstream 415105 2049326 ~ 2104299 (+) False G223694
TU253734 other upstream 415105 2098540 ~ 2104299 (+) False G223694
TU253572 other upstream 1248477 1270492 ~ 1270927 (+) True G223545
TU255127 other downstream 911495 3431136 ~ 3460136 (+) True G224953

Expression Profile