RNA id: TU254068


Basic Information

Item Value
RNA id TU254068
length 219
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G223995
representative True

Chromosome Information

Item Value
chromosome id CI01000052
NCBI id null
chromosome length 3494004
location 2824540 ~ 2824758 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTATATCAAATAATAAGTATACAAATTTGTGGCGTTTTTATAGCATATTGCTAAATCTGCAGCATGTGTCCAGTGGTGATTGGTCCATGGGGACCAGCATCCTTCTGGTCAGGTTTAATTGGCCTTCATGCCTGGACATGGGGCCACGTTGCTTTGATCTCAGTTAAAAGGAGCTAATTGATCTCTATGTTCAAACCACTTTGTGGTGTCCCAAGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254063 lncRNA upstream 3842 2820468 ~ 2820698 (+) True G223990
TU254059 lncRNA upstream 9232 2815081 ~ 2815308 (+) True G223986
TU253935 lncRNA upstream 185917 2541207 ~ 2638623 (+) True G223868
TU253933 lncRNA upstream 298766 2520202 ~ 2525774 (+) True G223866
TU253931 lncRNA upstream 304899 2519404 ~ 2519641 (+) True G223865
TU254069 lncRNA downstream 1264 2826022 ~ 2826270 (+) True G223996
TU254073 lncRNA downstream 5584 2830342 ~ 2830547 (+) True G224000
TU254079 lncRNA downstream 34363 2859121 ~ 2859352 (+) True G224005
TU254754 lncRNA downstream 94724 2919482 ~ 2919722 (+) True G224606
TU254777 lncRNA downstream 128150 2952908 ~ 2953214 (+) True G224629
CI01000052_02646977_02647792.mRNA mRNA upstream 176716 2646223 ~ 2647824 (+) True CI01000052_02646977_02647792
CI01000052_02622010_02627854.mRNA mRNA upstream 196230 2620241 ~ 2628310 (+) False CI01000052_02622010_02627854
CI01000052_02597704_02601005.mRNA mRNA upstream 222688 2597556 ~ 2601852 (+) True CI01000052_02597704_02601005
CI01000052_02591303_02592790.mRNA mRNA upstream 231743 2588859 ~ 2592797 (+) True CI01000052_02591303_02592790
CI01000052_02468269_02501109.mRNA mRNA upstream 323366 2468269 ~ 2501174 (+) True CI01000052_02468269_02501109
CI01000052_02845585_02849894.mRNA mRNA downstream 20792 2845550 ~ 2849978 (+) True CI01000052_02845585_02849894
CI01000052_02850485_02858740.mRNA mRNA downstream 25597 2850355 ~ 2858861 (+) True CI01000052_02850485_02858740
CI01000052_03401048_03405703.mRNA mRNA downstream 575512 3400270 ~ 3406312 (+) True CI01000052_03401048_03405703
CI01000052_03453140_03462799.mRNA mRNA downstream 628194 3452952 ~ 3462799 (+) True CI01000052_03453140_03462799
CI01000052_03484560_03485959.mRNA mRNA downstream 659802 3484560 ~ 3486253 (+) True CI01000052_03484560_03485959
TU253739 other upstream 720241 2049326 ~ 2104299 (+) False G223694
TU253734 other upstream 720241 2098540 ~ 2104299 (+) False G223694
TU253572 other upstream 1553613 1270492 ~ 1270927 (+) True G223545
TU255127 other downstream 606378 3431136 ~ 3460136 (+) True G224953

Expression Profile