RNA id: CI01000053_02449164_02455151.mRNA



Basic Information


Item Value
RNA id CI01000053_02449164_02455151.mRNA
length 1306
RNA type mRNA
GC content 0.38
exon number 12
gene id CI01000053_02449164_02455151
representative True

Chromosome Information


Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 2449016 ~ 2455151 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGGCTTGGTGGAGCAGTCGACATCCACTCTATCTCTTTGAATATACAACAATTAAATATGTGGTCACGCACAATAAGAAATTGGGACTGTTATACAGAATCTTTCAACTCACTGTCATGGGATATCTCATCGGGTGGGTATTTGTGACAAAGAAAGAGTACCAGGCAAAAGATGACACTATCGAGAGTTCTGTGGTAACTAAAGTTAAAGGAGTTGCACGTGTCAATGCAACAAATTTAAAATTATGGGGACCAGAGGACTATGTTTTCCCAAAACAGGGTGAGGGTTTTGTTTGTGTAATAACCAATTTCATCGAGACACCAAACCAAACAATGGGCAACTGTTTAGAGAGCCCCTTCTTACCAGATGCCAATTGCACTAAGGATGAAGAATGCATAGAAGGAAAGGCTGTTAGGGCTGGAAACGGAATTAAGACTGGCCTTTGTATTAATGGCACTTGTGAAATAAATGGCTGGTGTCCCACTGAAAAGACCGAGAAGCCAGACCCAGCCACTGTGGTGAGACAAGCTGAAAACTTTACCATATACATAAGGAACTTCATCAGATTTTCCCAGTTCAACTTCTCAAAATCAAATATATTAAACAAAAATGATTCATATCTTAAAAACTGCTCGTATGATGAAATTACCGACCCGTACTGTCCTATTTTTCGGCTGGGAGATATTGTAAGAAAAACTGGACATAGCTTTCAAGAAATGGCTGTAAAGGGTGGTTCACTTGGTGTTATGATTGAGTGGTCCTGTGACCTTGATAAAGATGACTCAAATTGCAATCCTCACTACAGCTTTCTGTTTCTGGGCAGCAACAAGTCACACGGATATAACTTCAGATTTGCTTACTATTTCAAAGATGATGCAGGAAAGGAGCAAAGAACACTTTACAAAGCGTTTGGAATTCATTTAGGCATCATGGTGTTTGGAACGGCAAGAAAGTTTAGTATTATTAAGACCATCATCAACATAGCATCAGTTCTTACTTTAATGACTGCTGGGTCTTACTTATGTGACATTATACTATGCATGATGAAGAAGAACACTGCTCACAGAGACTCAAAGTTTGAGAGAATACCAAAGATTGACAAAGAAAGTCCAGTGAAAAAGATGCCAGAGGGTCTGAAGAGAAAGTTCAGTTTATGAAATTTGCCATAATAGCAATGCTTGTAGTGTGAAATATGAGGAAAGCGCATTGTATTCATCTCATTCGAGGCAGACATCATTAGCTGTAAGTCTATAAGCTATAAGTCTAGAAAATGTTATTTATATAATATATTGTATGATGTATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU257249 lncRNA downstream 126965 2321795 ~ 2322051 (-) True G226719
TU257061 lncRNA downstream 244748 2201825 ~ 2204268 (-) True G226545
TU257189 lncRNA downstream 297367 2151329 ~ 2151649 (-) True G226661
TU257042 lncRNA downstream 306546 2139542 ~ 2142470 (-) False G226530
TU257325 lncRNA upstream 29993 2485144 ~ 2486677 (-) True CI01000053_02486308_02487685
TU257362 lncRNA upstream 105759 2560910 ~ 2563363 (-) False G226829
TU257361 lncRNA upstream 107281 2562432 ~ 2563363 (-) True G226829
TU257366 lncRNA upstream 112322 2567473 ~ 2567729 (-) True G226833
TU257367 lncRNA upstream 113534 2568685 ~ 2568928 (-) True G226834
CI01000053_02427507_02435639.mRNA mRNA downstream 13377 2427507 ~ 2435639 (-) True CI01000053_02427507_02435639
CI01000053_02390840_02400630.mRNA mRNA downstream 47908 2390491 ~ 2401108 (-) True CI01000053_02390840_02400630
CI01000053_02241056_02246083.mRNA mRNA downstream 202715 2240563 ~ 2246301 (-) True CI01000053_02241056_02246083
CI01000053_02225226_02226481.mRNA mRNA downstream 222535 2225210 ~ 2226481 (-) False CI01000053_02225226_02226481
CI01000053_02145248_02149126.mRNA mRNA downstream 299635 2145178 ~ 2149381 (-) True CI01000053_02145248_02149126
CI01000053_02486308_02487685.mRNA mRNA upstream 30282 2485433 ~ 2488030 (-) False CI01000053_02486308_02487685
CI01000053_02497603_02508436.mRNA mRNA upstream 42439 2497590 ~ 2508723 (-) True CI01000053_02497603_02508436
CI01000053_02533620_02536887.mRNA mRNA upstream 78442 2533593 ~ 2537840 (-) True CI01000053_02533620_02536887
CI01000053_02694095_02694625.mRNA mRNA upstream 238247 2693398 ~ 2696172 (-) True CI01000053_02694095_02694625
CI01000053_02716472_02737494.mRNA mRNA upstream 260861 2716012 ~ 2737577 (-) False CI01000053_02716472_02737494
TU257051 other downstream 211620 2217448 ~ 2237396 (-) True G226536
TU256158 other downstream 982284 1459595 ~ 1466732 (-) True G225812
TU255892 other downstream 1902148 543647 ~ 546868 (-) True G225574
TU257358 other upstream 110741 2565892 ~ 2567072 (-) True G226826
TU257528 other upstream 541566 2996717 ~ 2997268 (-) True G226963
TU257615 other upstream 1095182 3550333 ~ 3551978 (-) False CI01000053_03551506_03551965
TU257616 other upstream 1095508 3552883 ~ 3552971 (-) True G227041
TU257617 other upstream 1095508 3550659 ~ 3551978 (-) True CI01000053_03551506_03551965

Expression Profile