RNA id: TU257061


Basic Information

Item Value
RNA id TU257061
length 2424
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G226545
representative True

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 2201825 ~ 2204268 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCAATGAGTGAAATATTTATTTAAAAACTGAAAAATTAAACAAACCCACACACAGTTTTAGTATATATCATACAAAGATATTCTCCAAAATGTTATTGAGCGGACTTGTTTTTTCCATTAACAAAAGTGAGAGGCAGTTTAGAGGCTGGCTGAGCTGGTAAGACTAGACAACCGAATCTAAATGGTGGATAAACCATTACCGGAGGTGATGATGACACTCCAAAAAACGGAAATTAAATACCCAGTGTCGCAACTTAACATAACAGCCGAAGCAGTGCAACGAGTGAAACAATATGAGGGTATTAAGACATAACAACATAAGGGATATACAGTATATATCATATCTCAGTCACACAGCATCCACCCAAACACACACACATTATATTAGTATTAAAGAACACACACACACACACACACACACACACACTCTCTCTCAAAGCATGTTCATACAGAGTCTACAGGACCCTAATGCAATCATTTTCTCTGTTGTAGTTGCTGACTGGTAGTTTGTGGAGAAGTTGAGGTAACCATGGTTTGTAGATGACTACAAGACTGCATGTCCCTGTGTCCGGCTGAGCGGAGGTTCAGCCGAGCCCTGTTGAGAGCTGTGCTGTTGGCAGACAGTGGTGGTCTACAAGGCTATGTGGTCTACATTGCTTTGACGGAGGTGGACAGGCCTCTTGAACCAAATACATTTTACATCACATTTTTCATGCTTCTCCATTTTTTGTTTTATGAAAACTTTTTCAGGGACATGGTGATAGGAAAAAATATATATTAAAACTTGGGTCCCCTTTGCGTTTGTTCATAAACTTGAAGAAACTTTGCATTTGCTCGCAAAACTTTTTTGATGGAAATAACATTTCGATGTCTTGTGAATGCAAAGTTTCTCAGGGGATCACAATACTTGTGCAAGATAATGCAAAAAATTTAAGAGCAACTACGTTTCCTGTGGGAATGCAACTCTATTGCGATACAACATTGAAATTTAATTTTTCCTCCCATCTCTTACTTTTTCCCATCACCATGTTTTCTAAGGGCTTCATATCATTTCTTCTTTCTTTTAGATATCCACCAAGTTGGAAAATGGGAGTTAAAAAAAACCCAAACTAAACACCAGAGTTGAACACAGGGATGGCTATATCTGTTCTCACACCACACGGTTTTTCTACTGATTTCATGCTCTCAGTTCGCAATACCAAACTATAACTTTAAAACACTGTCCTAATGCTACTCAGATCACGATTTTAAAAGGTCTCTTTGAGGGAATGTGATCCTTGACCCTTTTTTCCCTTTTGGAAGGCACGGATGTCTCTCCTCGCCTCGGTGTGAAGGGGTGCGCGTATGTGGAGCTAGAAGAAGACAACAGGAATTAACAGATACTGTCATATTAACAGCGTGTAAACCGTACGGGACCGTTTTATGGGCCGTTACTAATACAATACGGTGCATTATCTATCTGTGCTCAGGAAACCTAAAAAGAGCTAATAAAACAAAAACGATGAGCTCTAGCCTGACGTGAGGTCTCACAAAAACGGTCAGTTCATAGTCAGTCATGGACTTGAAATAGGTGAAACACATCAGGACACAGTTTTGTCGAAATATCATATGTTAGATGAGCTATTTAGCAGTTTGTCCCTAAAAAGTGAACATGGTGAAACGGTAAAAAGCCTGTGGATTAAATCTATTTAGGGTTTCTTATAAAATCAATGCCTCGGGAACATAATCAAAAGAAAATACTACATACAGAAAAAGCACATCTCTGTTGAGTTTGTTAGTGTTTTCAGGTGTTAGTCCACAGTGGTCATCATCTACTACATCCAATGCTCTCGTTTTAGTTCAGTGACCACTGCTAAGGGGACTAGGGAAGGGCGGACCCAGACAAGGACGATCCTACACGACATTAAGGAATGCGTTTGATAGGTGGAAGTCACACAGCTGCTGTTTGTAAAAGTTGAGTCAGGAAGGGTCACAGCACAGTGCCATTTCCTGCAAAATGGGGTGACTCGCCCTTGTGCAATGCATCATGGGATGTTTCACGAGGAGACGGGATTGTTCTAAACGGTCGGGGTGGGGGAAGATTCTCCATTCCTTATGAGGAGGAAGAGGAAATGAAATACTCCGACAGTTCAGCGAGCCTGCACTTCCCTCTCTGTCCACTAGGTGGTGCCATCCACTTCCTGCCTTCCCCTCCCTCCCCCTTCGTCGCACACTATCGTCACACTCCTCACGTCTCCTGACTCCACGGGCAGGGGAGGGAGCAGGTTAGAAAAAAGCACCTTTTATTTGGCTTAAAATGTACAATAAAAGAAATCAAAAGAGTTAAAAAGTACAATAAAAAGGGAGAAGGGAAAGATAGTGTGTATATAAAGATGTCAAGCGCCCCGTCTGTAGGGCCGCTGCACAGAACACCACAAGTCTCAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257189 lncRNA downstream 50176 2151329 ~ 2151649 (-) True G226661
TU257042 lncRNA downstream 59355 2139542 ~ 2142470 (-) False G226530
TU257043 lncRNA downstream 59355 2139542 ~ 2142470 (-) True G226530
TU257188 lncRNA downstream 62834 2138568 ~ 2138991 (-) True G226660
TU257186 lncRNA downstream 94796 2106730 ~ 2107029 (-) True G226658
TU257249 lncRNA upstream 117527 2321795 ~ 2322051 (-) True G226719
TU257325 lncRNA upstream 280876 2485144 ~ 2486677 (-) True CI01000053_02486308_02487685
TU257362 lncRNA upstream 356642 2560910 ~ 2563363 (-) False G226829
TU257361 lncRNA upstream 358164 2562432 ~ 2563363 (-) True G226829
TU257366 lncRNA upstream 363205 2567473 ~ 2567729 (-) True G226833
CI01000053_02145248_02149126.mRNA mRNA downstream 52444 2145178 ~ 2149381 (-) True CI01000053_02145248_02149126
CI01000053_02122241_02132642.mRNA mRNA downstream 69038 2121629 ~ 2132787 (-) True CI01000053_02122241_02132642
CI01000053_02109802_02117454.mRNA mRNA downstream 83868 2109171 ~ 2117957 (-) True CI01000053_02109802_02117454
CI01000053_02041737_02066520.mRNA mRNA downstream 135167 2041690 ~ 2066658 (-) True CI01000053_02041737_02066520
CI01000053_02032534_02040859.mRNA mRNA downstream 160388 2032380 ~ 2041437 (-) True CI01000053_02032534_02040859
CI01000053_02225226_02226481.mRNA mRNA upstream 20942 2225210 ~ 2226481 (-) False CI01000053_02225226_02226481
CI01000053_02241056_02246083.mRNA mRNA upstream 36295 2240563 ~ 2246301 (-) True CI01000053_02241056_02246083
CI01000053_02390840_02400630.mRNA mRNA upstream 186223 2390491 ~ 2401108 (-) True CI01000053_02390840_02400630
CI01000053_02427507_02435639.mRNA mRNA upstream 223239 2427507 ~ 2435639 (-) True CI01000053_02427507_02435639
CI01000053_02449164_02455151.mRNA mRNA upstream 244748 2449016 ~ 2455151 (-) True CI01000053_02449164_02455151
TU256158 other downstream 735093 1459595 ~ 1466732 (-) True G225812
TU255892 other downstream 1654957 543647 ~ 546868 (-) True G225574
TU257051 other upstream 13180 2217448 ~ 2237396 (-) True G226536
TU257358 other upstream 361624 2565892 ~ 2567072 (-) True G226826
TU257528 other upstream 792449 2996717 ~ 2997268 (-) True G226963
TU257615 other upstream 1346065 3550333 ~ 3551978 (-) False CI01000053_03551506_03551965
TU257616 other upstream 1346391 3552883 ~ 3552971 (-) True G227041

Expression Profile