RNA id: TU257249


Basic Information

Item Value
RNA id TU257249
length 257
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G226719
representative True

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 2321795 ~ 2322051 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTTATAACATCATATATCAACATAGTGCAAAATGGTATTAAAATTATGTGTAGAAGTCGTTGCTTTGTTATGAGAAAGAATGTCCGGAAAAATGAATTTCAATGATGTCATTCAGAGTAACCAATATAAAGGGACCATTTTGGATCAAGTCATGCAGATAGTATCATGTGACAGGATGTGACATCATTCAGACACCTGCAAAGGACCACACGGTTGTGAAGCAAAGTAACTAATTCTCTCTTAACTATTTGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257061 lncRNA downstream 117527 2201825 ~ 2204268 (-) True G226545
TU257189 lncRNA downstream 170146 2151329 ~ 2151649 (-) True G226661
TU257042 lncRNA downstream 179325 2139542 ~ 2142470 (-) False G226530
TU257043 lncRNA downstream 179325 2139542 ~ 2142470 (-) True G226530
TU257188 lncRNA downstream 182804 2138568 ~ 2138991 (-) True G226660
TU257325 lncRNA upstream 163093 2485144 ~ 2486677 (-) True CI01000053_02486308_02487685
TU257362 lncRNA upstream 238859 2560910 ~ 2563363 (-) False G226829
TU257361 lncRNA upstream 240381 2562432 ~ 2563363 (-) True G226829
TU257366 lncRNA upstream 245422 2567473 ~ 2567729 (-) True G226833
TU257367 lncRNA upstream 246634 2568685 ~ 2568928 (-) True G226834
CI01000053_02241056_02246083.mRNA mRNA downstream 75494 2240563 ~ 2246301 (-) True CI01000053_02241056_02246083
CI01000053_02225226_02226481.mRNA mRNA downstream 95314 2225210 ~ 2226481 (-) False CI01000053_02225226_02226481
CI01000053_02145248_02149126.mRNA mRNA downstream 172414 2145178 ~ 2149381 (-) True CI01000053_02145248_02149126
CI01000053_02122241_02132642.mRNA mRNA downstream 189008 2121629 ~ 2132787 (-) True CI01000053_02122241_02132642
CI01000053_02109802_02117454.mRNA mRNA downstream 203838 2109171 ~ 2117957 (-) True CI01000053_02109802_02117454
CI01000053_02390840_02400630.mRNA mRNA upstream 68440 2390491 ~ 2401108 (-) True CI01000053_02390840_02400630
CI01000053_02427507_02435639.mRNA mRNA upstream 105456 2427507 ~ 2435639 (-) True CI01000053_02427507_02435639
CI01000053_02449164_02455151.mRNA mRNA upstream 126965 2449016 ~ 2455151 (-) True CI01000053_02449164_02455151
CI01000053_02486308_02487685.mRNA mRNA upstream 163382 2485433 ~ 2488030 (-) False CI01000053_02486308_02487685
CI01000053_02497603_02508436.mRNA mRNA upstream 175539 2497590 ~ 2508723 (-) True CI01000053_02497603_02508436
TU257051 other downstream 84399 2217448 ~ 2237396 (-) True G226536
TU256158 other downstream 855063 1459595 ~ 1466732 (-) True G225812
TU255892 other downstream 1774927 543647 ~ 546868 (-) True G225574
TU257358 other upstream 243841 2565892 ~ 2567072 (-) True G226826
TU257528 other upstream 674666 2996717 ~ 2997268 (-) True G226963
TU257615 other upstream 1228282 3550333 ~ 3551978 (-) False CI01000053_03551506_03551965
TU257616 other upstream 1228608 3552883 ~ 3552971 (-) True G227041
TU257617 other upstream 1228608 3550659 ~ 3551978 (-) True CI01000053_03551506_03551965

Expression Profile