RNA id: TU257367


Basic Information

Item Value
RNA id TU257367
length 244
lncRNA type antisense_over
GC content 0.53
exon number 1
gene id G226834
representative True

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 2568685 ~ 2568928 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGTGTCCAGTAAACCGGTGTGGGAATTCCGGCAGGAAAATGGAAATAAAGCCCGGCAGTGTCCACTCTAGACGAGGCCCCTCAGGGTTTGCGTTTGAGGGCCGAGATTGCTCAGAGATGGGGTATTCTCTGCACTGGGCCCTGCGTCTAAATGGACTGTGATGAACAAGCGGAGCCGAGAGAGACAGGAAGCCCTGATGACATGACAAGGATCTCCTCTTCACCAGTAATGATGATGATGCCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257366 lncRNA downstream 956 2567473 ~ 2567729 (-) True G226833
TU257362 lncRNA downstream 5322 2560910 ~ 2563363 (-) False G226829
TU257361 lncRNA downstream 5322 2562432 ~ 2563363 (-) True G226829
TU257325 lncRNA downstream 82008 2485144 ~ 2486677 (-) True CI01000053_02486308_02487685
TU257249 lncRNA downstream 246634 2321795 ~ 2322051 (-) True G226719
TU257403 lncRNA upstream 24392 2593320 ~ 2595466 (-) True G226862
TU257388 lncRNA upstream 143259 2712187 ~ 2715746 (-) True G226847
TU257385 lncRNA upstream 164164 2733092 ~ 2738128 (-) True G226845
TU257384 lncRNA upstream 164470 2733398 ~ 2738128 (-) True G226845
TU257389 lncRNA upstream 179650 2748578 ~ 2751192 (-) True G226848
CI01000053_02533620_02536887.mRNA mRNA downstream 30845 2533593 ~ 2537840 (-) True CI01000053_02533620_02536887
CI01000053_02497603_02508436.mRNA mRNA downstream 59962 2497590 ~ 2508723 (-) True CI01000053_02497603_02508436
CI01000053_02486308_02487685.mRNA mRNA downstream 80655 2485433 ~ 2488030 (-) False CI01000053_02486308_02487685
CI01000053_02449164_02455151.mRNA mRNA downstream 113534 2449016 ~ 2455151 (-) True CI01000053_02449164_02455151
CI01000053_02427507_02435639.mRNA mRNA downstream 133046 2427507 ~ 2435639 (-) True CI01000053_02427507_02435639
CI01000053_02694095_02694625.mRNA mRNA upstream 124470 2693398 ~ 2696172 (-) True CI01000053_02694095_02694625
CI01000053_02716472_02737494.mRNA mRNA upstream 147084 2716012 ~ 2737577 (-) False CI01000053_02716472_02737494
CI01000053_02739707_02746533.mRNA mRNA upstream 170566 2739494 ~ 2746582 (-) True CI01000053_02739707_02746533
CI01000053_02753283_02763401.mRNA mRNA upstream 184150 2753078 ~ 2763797 (-) True CI01000053_02753283_02763401
CI01000053_02817187_02856529.mRNA mRNA upstream 246938 2815866 ~ 2856648 (-) True CI01000053_02817187_02856529
TU257358 other downstream 1613 2565892 ~ 2567072 (-) True G226826
TU257051 other downstream 331289 2217448 ~ 2237396 (-) True G226536
TU256158 other downstream 1101953 1459595 ~ 1466732 (-) True G225812
TU255892 other downstream 2021817 543647 ~ 546868 (-) True G225574
TU257528 other upstream 427789 2996717 ~ 2997268 (-) True G226963
TU257615 other upstream 981405 3550333 ~ 3551978 (-) False CI01000053_03551506_03551965
TU257616 other upstream 981731 3552883 ~ 3552971 (-) True G227041
TU257617 other upstream 981731 3550659 ~ 3551978 (-) True CI01000053_03551506_03551965
TU258305 other upstream 1518309 4087237 ~ 4087740 (-) True G227604

Expression Profile