RNA id: TU257528


Basic Information

Item Value
RNA id TU257528
length 552
RNA type TUCP
GC content 0.41
exon number 1
gene id G226963
representative True

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 2996717 ~ 2997268 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCTCAAACCTTTATTCTCTTATTTATGTAACAAATGTGGTCATTAACTGTAATAATGAAAGATTTTTCAATATATATATACACTATATTGTCAAAAGTATAGTGTATAAATCATTGAATTTGAACCCTCCAAATCATTGAATTTAGGTGTTCCAATCACTTCCATGGCCACAGGTGTATAAAATCAAGCACCTAGGCATGCAGACTGCTTCTAGAAACATTTGTGAAAGAATGGGTCGCTCTCAGGAGCTCAGTGAATTCAAGCATGGTACTGTGATAGGTTGCCACCTGTGCAATAAGTCCATTTGTGAAATTTCCTCACTACTAAATATTCCACGGTCAACTGTTAGTGGTATCATAACAAAGTGGAAGCAATTGGGAACAACAGCAACTCAGCCACAAAGTGGTAGGCCACGTAAAATCACAGAGCGGGGTCAGCGCATGCTGAGGCGCACAGTGCGCAGAAGTCGCCAACTTTCTGCAGAGTCAATAGCTACAGACCCCCAAACTTCGTGTGGCCTTCAGATTAGCTCAAGAACAGTGCGTAGAGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257509 lncRNA downstream 35492 2958334 ~ 2961225 (-) True G226946
TU257465 lncRNA downstream 150535 2841623 ~ 2846182 (-) True G226914
TU257476 lncRNA downstream 218041 2777975 ~ 2778676 (-) True G226925
TU257470 lncRNA downstream 229215 2767252 ~ 2767502 (-) True G226919
TU257448 lncRNA downstream 231364 2765113 ~ 2765353 (-) True G226906
TU257532 lncRNA upstream 39327 3036595 ~ 3046469 (-) True G226967
TU257574 lncRNA upstream 184077 3181345 ~ 3181577 (-) True G227003
TU257575 lncRNA upstream 184735 3182003 ~ 3182298 (-) True G227004
TU257620 lncRNA upstream 224970 3222238 ~ 3308690 (-) True G227042
TU257580 lncRNA upstream 237159 3234427 ~ 3234738 (-) True G227008
CI01000053_02968381_02979969.mRNA mRNA downstream 16671 2968223 ~ 2980046 (-) True CI01000053_02968381_02979969
CI01000053_02905181_02934126.mRNA mRNA downstream 62591 2904675 ~ 2934126 (-) True CI01000053_02905181_02934126
CI01000053_02862161_02873752.mRNA mRNA downstream 122965 2861731 ~ 2873752 (-) True CI01000053_02862161_02873752
CI01000053_02817187_02856529.mRNA mRNA downstream 140069 2815866 ~ 2856648 (-) True CI01000053_02817187_02856529
CI01000053_02753283_02763401.mRNA mRNA downstream 232920 2753078 ~ 2763797 (-) True CI01000053_02753283_02763401
CI01000053_03013700_03026612.mRNA mRNA upstream 16432 3013700 ~ 3026612 (-) True CI01000053_03013700_03026612
CI01000053_03072131_03076683.mRNA mRNA upstream 74721 3071989 ~ 3076683 (-) True CI01000053_03072131_03076683
CI01000053_03120615_03122486.mRNA mRNA upstream 122667 3119935 ~ 3122486 (-) True CI01000053_03120615_03122486
CI01000053_03142995_03145565.mRNA mRNA upstream 145727 3142995 ~ 3145565 (-) True CI01000053_03142995_03145565
CI01000053_03304977_03312227.mRNA mRNA upstream 307106 3304374 ~ 3312639 (-) True CI01000053_03304977_03312227
TU257358 other downstream 429645 2565892 ~ 2567072 (-) True G226826
TU257051 other downstream 759321 2217448 ~ 2237396 (-) True G226536
TU256158 other downstream 1529985 1459595 ~ 1466732 (-) True G225812
TU255892 other downstream 2449849 543647 ~ 546868 (-) True G225574
TU257615 other upstream 553065 3550333 ~ 3551978 (-) False CI01000053_03551506_03551965
TU257616 other upstream 553391 3552883 ~ 3552971 (-) True G227041
TU257617 other upstream 553391 3550659 ~ 3551978 (-) True CI01000053_03551506_03551965
TU258305 other upstream 1089969 4087237 ~ 4087740 (-) True G227604
TU259481 other upstream 2787215 5784483 ~ 5787690 (-) True G228651

Expression Profile