RNA id: CI01000063_04834309_04848552.mRNA



Basic Information


Item Value
RNA id CI01000063_04834309_04848552.mRNA
length 1642
RNA type mRNA
GC content 0.47
exon number 8
gene id CI01000063_04834309_04848552
representative True

Chromosome Information


Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 4834047 ~ 4848720 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATAGTCACACACCCACATCGTATCTAAACCCAAAATTAAAAAAAAGAGACTTCAATCTTTGCAGACCCGTCACCATGTGGATTGCTGGTCGCAAATACGTTCACACACACACACACACACACACCCTCCATCACAGAGCGTTTTTTCAGGGATTCATTTCCGCCCACAATGCATTTTTCATATCTTGGCTGGTCTCAAGCCTTCACATCTTCCTTCCGCAGTCAGCTTAAGAAATCCCACAAAGCCAGTGGGTTGCCAGGCGACAGGGCCTGCCTTGGACCCCCATCGGAGGCGAAGGAGGGCGGCGTGACCGCGAGCTCTGCAAACCTCACGCTCACGGTTGCTCACTCTCACTCGTTCACAGCAGCTGCATCAGACTCCACATCTGCCATTCACTACTTTGTGATGGTCTGCAGTAACCCGAAACTCTATGAGATCACACCCTTACACACTCACATACACAATCGATCACCGACACAAGTCTTGTATGAAGGTCATCCTAGAAATCATCTGTCTCTGCCTCGGGCTCTCCGTGGCCTCTTTGCGCATTCTATCACCCCGAGTCTTCTCACCGTGCTGCCCACTGGACCGGTCAGCCCCTCCCTCTCTCCTGACCTCCTCTCCGAGTGTGCCTATGGTCCTTGGGGCGGCCCACAGACCCTCTCCCTCCTGCTGACACGAACAGTCCGCCTATATGAAAAATCATACGAACCGTCTTTATACATCACACCACACCGCTCTCATGATTCACCTTCGGAGCCTCTCTGTAAGCTCGGGCCTCGCATACCCGGCCACTCACACAGACCATTTGAGTCAGGAAATGAGCTTGCAGCTCCACGCTATTATAACAAAGCTAGTGAGGACAGTAAAGCTCAGTGGTTGCCCAGGTCCCTAATGGTCTCGAACATAGGCATCTCTGCTCCGCATCCTGTGGCTCCTGCAGCCGCAGTGGCATTCGCTGAGTGCTTTCTCTATGAGGTATTATGCTTTTTGCCATATGCTGCAGATGCCAGCCTGCTCTCTTCTCTCTCTTTTCCTCTGTTTCTCACTCAAATCATCCTAGAAATGCACACATGCACATCTGAAAACAGAATGAGCAGAAAAGAAATCAGAATCAAGGCTGTTTTTGCCAGGCTTGGCACAGGCACGATTTGTATAATTGCTTTTGACAAAAATGCTTTGCCTATCAAATATCATTCTTCATTAAATTGCCTAGGATTCAATAAGCTGTCATATTTCCATATTTCCAATTTGACAGGTTGTTCTTGTGGTGGGAATCTAAATGTATTCCAGAGCTCGCTCTCCACTCGAGCGCGGCGTGGCTCGCACTTATCACGAGGAGCGAAGAGGAGAGGGGGAACTCATTTCTACCCAGCGTAAAGAGCTCCAATTCATTAACATAACACCATACCAGACATGAATATGGATTATTGGAAATCTTATGAAAGAAAACAGCCTCGCTTATCCAATCTTTGCCCTCCATTTTAAAAAGCATTAATCGGAGATACGGATTCAAAGGAAGAAAGACTCAATTAAAAAGCAATTAGAACCCAGACGGACCAATGCAGCCAGAACATGTTAGACCTTTCAGCAATCACCTTTTAATCAATTAGCAAAAGCATTATGAAATTGTATTAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU301356 lncRNA downstream 11285 4822126 ~ 4822762 (-) True G265517
TU300660 lncRNA downstream 90492 4743318 ~ 4743555 (-) True G264942
TU300653 lncRNA downstream 96665 4737134 ~ 4737382 (-) True G264935
TU300548 lncRNA downstream 183282 4649247 ~ 4650765 (-) True G264836
TU300538 lncRNA downstream 199833 4632698 ~ 4634214 (-) True G264826
TU301343 lncRNA upstream 48223 4896943 ~ 4916836 (-) True G265504
TU301475 lncRNA upstream 107871 4956591 ~ 4957595 (-) True G265610
TU301438 lncRNA upstream 127691 4976411 ~ 4990600 (-) True G265574
TU301485 lncRNA upstream 177547 5026267 ~ 5026848 (-) True G265620
TU301490 lncRNA upstream 251636 5100356 ~ 5100986 (-) True G265625
CI01000063_04667829_04669237.mRNA mRNA downstream 164810 4667166 ~ 4669237 (-) True CI01000063_04667829_04669237
CI01000063_04471188_04479927.mRNA mRNA downstream 354120 4469900 ~ 4479927 (-) True CI01000063_04471188_04479927
CI01000063_04183070_04264881.mRNA mRNA downstream 569166 4182580 ~ 4264881 (-) True CI01000063_04183070_04264881
CI01000063_04101695_04159421.mRNA mRNA downstream 674626 4101402 ~ 4159421 (-) True CI01000063_04101695_04159421
CI01000063_04056574_04087071.mRNA mRNA downstream 745432 4056196 ~ 4088615 (-) True CI01000063_04056574_04087071
CI01000063_05056169_05057789.mRNA mRNA upstream 207449 5056169 ~ 5057855 (-) True CI01000063_05056169_05057789
CI01000063_05070661_05081280.mRNA mRNA upstream 221703 5070423 ~ 5081280 (-) True CI01000063_05070661_05081280
CI01000063_05085075_05095432.mRNA mRNA upstream 235548 5084268 ~ 5095527 (-) True CI01000063_05085075_05095432
CI01000063_05160162_05161742.mRNA mRNA upstream 309847 5158567 ~ 5163276 (-) False CI01000063_05160162_05161742
CI01000063_05189361_05189645.mRNA mRNA upstream 339775 5188495 ~ 5189645 (-) False CI01000063_05189361_05189645
TU298806 other downstream 2107512 2725759 ~ 2726535 (-) True CI01000063_02725759_02726399
TU298801 other downstream 2506328 2325112 ~ 2327719 (-) True G263230
TU298810 other downstream 2655711 2176439 ~ 2177485 (-) True G263239
TU298670 other downstream 3163971 1669411 ~ 1670076 (-) True CI01000063_01669384_01670016
TU301418 other upstream 313774 5183279 ~ 5183287 (-) True G265567
TU301411 other upstream 339683 5190050 ~ 5190617 (-) True G265565
TU301419 other upstream 401285 5250005 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301420 other upstream 401339 5250059 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301421 other upstream 401446 5250166 ~ 5253811 (-) False CI01000063_05252331_05253850

Expression Profile