RNA id: CI01000063_05616519_05617045.mRNA


Basic Information

Item Value
RNA id CI01000063_05616519_05617045.mRNA
length 993
RNA type mRNA
GC content 0.37
exon number 3
gene id CI01000063_05616519_05617045
representative False

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 5615806 ~ 5617112 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTTCCTGACTGACATCCGACACGAAACATGGACTTCATCAAGGGAGCAGCAGATGGGAAGGTGGACAAGGTAATCGATCAGGCTGCTGTGGTGGCCAAAGAGAAAGTTGGAGCAATAATCGGAGGAGACAAGAAAAAGGCAGAAGGTGCAAAAGACAAGAAACCGCAAGGAGGTGTTGGTGACATGTTGAGCGGTGCGATCGGCAAAGCTGGTACAGACGCTGCGGCCGATAAGGCAGCTGAACAGGCGTTGTCCATTGGGAAGGGCCTTTTCAAGTGAGCCTGGATACTTTAAGCCTGAACTCTCTCACTCATCGCTGTATGCTAACTGGACCCCATCCTTCTGCAATTATCTTCTAACTTTCAGCACTGAATAATATGTGTCTCCAGGAGCTGTACATTTTGTCGTCTAGAAATAGGCAATGTCTGAAGCAGATAACTTTCTGTATATTTTGCAGTACCTTTTTGAGCTCAAACTTAAAAAATGTTTGTTGTAATTTCAGAAACTTTGTATAAAAGCACTTTCAGAAATAAATTATGAAAATAAATTAACTATTATTTGGACAATGGCAATAAACTTAACAGGATGCTTTATGAAAATAAAGAATTAGAGAGCCATTGCTCAGTTAGAGATTGAGTTTGAACAGGTTTAAGTTCATTTATGTATTTTAACTATCTTTTGAAATGTTTAAAATTATTTCAGAGTAACATCACAGAATCAATAAAATACATTTCTAACACTTACTGATGTTTGTTCTGTTGTTTTCCCACCAAAATGATGTCACTTCCTGGAGGGCTGGTTTTGGTTAGTTAAAGGGATATTGGACTACCTCTTAAAAAAATATGGTGCGTTCGAGTCATGTTGGACAGATCATATTTAAGAGTTTAATGCACCTGAACGGCACCAAAAATGACTTATTACAATTTACTCAGGATTTTCTTTGTCACAAATTTATTAAAATATATTTAACTATTATTTTTCTCAAAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU301687 lncRNA downstream 49430 5559531 ~ 5566376 (-) True G265793
TU301629 lncRNA downstream 166428 5449092 ~ 5449378 (-) True G265742
TU301620 lncRNA downstream 201138 5414430 ~ 5414668 (-) True G265733
TU301619 lncRNA downstream 201939 5413427 ~ 5413867 (-) True G265732
TU301601 lncRNA downstream 238830 5376744 ~ 5376976 (-) True G265714
TU301686 lncRNA upstream 281299 5898372 ~ 5898410 (-) True G265792
TU301787 lncRNA upstream 305444 5922517 ~ 5926035 (-) True G265890
TU301783 lncRNA upstream 311669 5928742 ~ 5931804 (-) True G265889
TU301688 lncRNA upstream 336585 5953658 ~ 5954558 (-) True CI01000063_05950749_05954473
TU301696 lncRNA upstream 521618 6138691 ~ 6151199 (-) True G265802
CI01000063_05473346_05474995.mRNA mRNA downstream 140049 5473338 ~ 5475757 (-) True CI01000063_05473346_05474995
CI01000063_05353701_05355458.mRNA mRNA downstream 259522 5352758 ~ 5356284 (-) True CI01000063_05353701_05355458
CI01000063_05304502_05306803.mRNA mRNA downstream 309003 5304439 ~ 5306803 (-) True CI01000063_05304502_05306803
CI01000063_05257128_05262520.mRNA mRNA downstream 352475 5256958 ~ 5263331 (-) True CI01000063_05257128_05262520
CI01000063_05252331_05253850.mRNA mRNA downstream 361956 5251894 ~ 5253850 (-) False CI01000063_05252331_05253850
CI01000063_05627849_05635031.mRNA mRNA upstream 10685 5627758 ~ 5635031 (-) True CI01000063_05627849_05635031
CI01000063_05652987_05657351.mRNA mRNA upstream 35203 5652276 ~ 5657351 (-) True CI01000063_05652987_05657351
CI01000063_05689441_05689773.mRNA mRNA upstream 71230 5688303 ~ 5689881 (-) True CI01000063_05689441_05689773
CI01000063_05690755_05712496.mRNA mRNA upstream 73191 5690264 ~ 5712923 (-) True CI01000063_05690755_05712496
CI01000063_05729622_05743365.mRNA mRNA upstream 112549 5729622 ~ 5743365 (-) True CI01000063_05729622_05743365
TU301422 other downstream 361866 5250835 ~ 5253940 (-) False CI01000063_05252331_05253850
TU301419 other downstream 361995 5250005 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301878 other upstream 671085 6288158 ~ 6290946 (-) True G265976
TU302824 other upstream 1672422 7289495 ~ 7290013 (-) False G266797
TU302823 other upstream 1672655 7289728 ~ 7290013 (-) False G266797
TU302826 other upstream 1672655 7289728 ~ 7290224 (-) True G266797
TU302679 other upstream 1822012 7439085 ~ 7441435 (-) True G266660

Expression Profile