RNA id: TU301532


Basic Information

Item Value
RNA id TU301532
length 815
lncRNA type read_through
GC content 0.47
exon number 7
gene id G265665
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 5264492 ~ 5281847 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCAATCTGTTTGTTGGTCAGCGGACACTCTGGGTCCCACATCTTCATCTCCAGTTTAGACTGGTCTCTGTCATCAGGTTCTCCTTCCTGTAGCATTTCTGGGACATCAGCCTGAAAACGTGGACCAACGCGAATCTCGCCCTTATCGGCCAATAGTGTCTTCTGTGTGGGGTCGTACACCAATGAGTAAAAAAATGTGTCCTCTTTCTCAAGGTAGGAGAGCACAGCTTCTGTCTCGTTCAGGAGGGCTACACTGCACTTGCCCCTGATGTGTGTGGCAGGGAGGGATTCGTACTGGCGGGAAAGGAAAAGCTCTCTGTGGCGAAGCTGATGTTTCTGTTTTTCAGAGAGTTCTGGCTCTGAGGGGCTTTCCTTCTCTTCTTCCAGGTCCTTTGCATGTTTGTCTGCCAGCTGGATGAGGCTCTGTGAGATATCCCTTCTCCTGTAGAAACAGACCACCTTTGCCTCCACATTACCGCTTGCCGTCTTATTCAGTTCCTCTATTCGCCTGATCAGATAGGGGTTGCTTGAAGAATTCTCGAAGAAGACATAATCTCCGACCCGGTACATGTTGGCCGCCATTTCTGCCCTCCCGGAGTGTTAAAAAACCAAACCATAAACTAAAATAAAAACAAAATAAATATGTGAATCAAAAAGACATCTACGTCCTGTGATCTGTTAAAAAGCAAACTGGCTTAAGATGTGATAAATACGGGGGATGGACCTCTGTAAGAATAGGAGATTTTTTGCAGCCCCCCTCCCGAGATTCACAGTACAATACAGTAACTCACGCGCTAGAAAAGGCTCGAGCGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU301540 lncRNA downstream 149 5264142 ~ 5264343 (-) True G265672
TU301519 lncRNA downstream 37650 5221736 ~ 5226842 (-) True G265653
TU301500 lncRNA downstream 139009 5125257 ~ 5125483 (-) True G265635
TU301406 lncRNA downstream 151388 5109364 ~ 5113104 (-) False G265564
TU301410 lncRNA downstream 151388 5109364 ~ 5113104 (-) True G265564
TU301566 lncRNA upstream 44285 5326132 ~ 5329568 (-) True G265693
TU301578 lncRNA upstream 68019 5349866 ~ 5350103 (-) True G265705
TU301594 lncRNA upstream 78911 5360758 ~ 5362072 (-) False G265709
TU301588 lncRNA upstream 79080 5360927 ~ 5365398 (-) True G265709
TU301601 lncRNA upstream 94897 5376744 ~ 5376976 (-) True G265714
CI01000063_05257128_05262520.mRNA mRNA downstream 1161 5256958 ~ 5263331 (-) True CI01000063_05257128_05262520
CI01000063_05252331_05253850.mRNA mRNA downstream 10642 5251894 ~ 5253850 (-) False CI01000063_05252331_05253850
CI01000063_05248902_05250362.mRNA mRNA downstream 13867 5248697 ~ 5250625 (-) True CI01000063_05248902_05250362
CI01000063_05198199_05217488.mRNA mRNA downstream 46848 5198166 ~ 5217644 (-) True CI01000063_05198199_05217488
CI01000063_05189361_05189645.mRNA mRNA downstream 74847 5188495 ~ 5189645 (-) False CI01000063_05189361_05189645
CI01000063_05304502_05306803.mRNA mRNA upstream 22592 5304439 ~ 5306803 (-) True CI01000063_05304502_05306803
CI01000063_05353701_05355458.mRNA mRNA upstream 70911 5352758 ~ 5356284 (-) True CI01000063_05353701_05355458
CI01000063_05473346_05474995.mRNA mRNA upstream 191491 5473338 ~ 5475757 (-) True CI01000063_05473346_05474995
CI01000063_05616519_05617045.mRNA mRNA upstream 333959 5615806 ~ 5617073 (-) False CI01000063_05616519_05617045
CI01000063_05627849_05635031.mRNA mRNA upstream 345911 5627758 ~ 5635031 (-) True CI01000063_05627849_05635031
TU301422 other downstream 10552 5250835 ~ 5253940 (-) False CI01000063_05252331_05253850
TU301419 other downstream 10681 5250005 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301675 other upstream 264854 5546701 ~ 5546719 (-) True G265781
TU301878 other upstream 1006311 6288158 ~ 6290946 (-) True G265976
TU302824 other upstream 2007648 7289495 ~ 7290013 (-) False G266797
TU302823 other upstream 2007881 7289728 ~ 7290013 (-) False G266797
TU302826 other upstream 2007881 7289728 ~ 7290224 (-) True G266797

Expression Profile