RNA id: CI01000065_02562189_02562709.mRNA



Basic Information


Item Value
RNA id CI01000065_02562189_02562709.mRNA
length 550
RNA type mRNA
GC content 0.39
exon number 1
gene id CI01000065_02562189_02562709
representative True

Chromosome Information


Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 2562189 ~ 2562738 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATCATCTGCTGGTGTCTTTTTGCACCCAACTGACAGTCTTTAAGGTAAACCTGTGTCGCTCTATCACATTTTGGAACATTAAGAACGTTGATGTGTCTACTTTTGCTGATGAACTTGCCATCTTTTCCAGCAAAGCTGATTTTTCTGATGCTGATGCACCGATTTCATATTATAATAATGGACTAACTGAGATTTTGGACGTTTATGCACCTGTGAAAACACGGACTGTTTCTTTTAATCATTCTGCTCCATGGTTTACCCCAGAACTTCATCAGCTTAAAACTAAAGGCCGTAGGTTAGAGCATCTGCATGCCAAATCTGGTCTCACTGTACACAAACAAATGCTTGCTGACCATGTCCAACTTTACAAGGATGCACTGTCTAAAGCCAAATCTGACTATTATTCTAATTTAATTGGAGCCAGTGAAAGGAACTCAAGATCTCTCTTTTCTGTGGTAAAAAAATATTTTACGACCACCGGACTCTCTGCCATCAGATATGTATTCTACCACACTATGTGACAGTTTTATGACTTTCTTTGAGTCTAAGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU304801 lncRNA upstream 16521 2545397 ~ 2545668 (+) True G268641
TU304798 lncRNA upstream 22985 2538990 ~ 2539204 (+) True G268638
TU304795 lncRNA upstream 24814 2537144 ~ 2537375 (+) True G268635
TU304760 lncRNA upstream 31884 2464783 ~ 2530305 (+) False G268603
TU304761 lncRNA upstream 31884 2464783 ~ 2530305 (+) True G268603
TU304807 lncRNA downstream 673 2563411 ~ 2563637 (+) True G268647
TU304972 lncRNA downstream 24689 2587427 ~ 2587726 (+) True G268786
TU304973 lncRNA downstream 25285 2588023 ~ 2588312 (+) True G268787
TU304975 lncRNA downstream 29795 2592533 ~ 2592911 (+) True G268789
TU304982 lncRNA downstream 37031 2599769 ~ 2599992 (+) True G268796
CI01000065_02442834_02444552.mRNA mRNA upstream 116238 2441659 ~ 2445951 (+) True CI01000065_02442834_02444552
CI01000065_02222213_02282352.mRNA mRNA upstream 279757 2222029 ~ 2282432 (+) True CI01000065_02222213_02282352
CI01000065_01938179_01949512.mRNA mRNA upstream 611438 1938085 ~ 1950751 (+) True CI01000065_01938179_01949512
CI01000065_01867964_01868983.mRNA mRNA upstream 692376 1867788 ~ 1869813 (+) True CI01000065_01867964_01868983
CI01000065_01452148_01608735.mRNA mRNA upstream 953454 1452148 ~ 1608735 (+) True CI01000065_01452148_01608735
CI01000065_02714893_02755256.mRNA mRNA downstream 150703 2713441 ~ 2755370 (+) True CI01000065_02714893_02755256
CI01000065_02770419_02775297.mRNA mRNA downstream 207311 2770049 ~ 2776165 (+) True CI01000065_02770419_02775297
CI01000065_02783579_02788578.mRNA mRNA downstream 220577 2783315 ~ 2788866 (+) True CI01000065_02783579_02788578
CI01000065_02806198_02813320.mRNA mRNA downstream 243460 2806198 ~ 2813722 (+) True CI01000065_02806198_02813320
CI01000065_02856492_02888060.mRNA mRNA downstream 293754 2856492 ~ 2888455 (+) True CI01000065_02856492_02888060
TU304676 other upstream 322191 2239159 ~ 2239998 (+) True G268525
TU303653 other upstream 1479534 1082153 ~ 1082655 (+) True G267577
TU303494 other upstream 1779310 782283 ~ 782879 (+) True G267432
TU302970 other upstream 2517523 43038 ~ 44666 (+) True G266932
TU304991 other downstream 46169 2608907 ~ 2638205 (+) True G268805
TU305428 other downstream 896219 3458957 ~ 3462928 (+) True G269181
TU305478 other downstream 990066 3552804 ~ 3553124 (+) False G269225

Expression Profile