RNA id: TU305587


Basic Information

Item Value
RNA id TU305587
length 366
lncRNA type sense_over
GC content 0.40
exon number 2
gene id CI01000065_02979795_02989709
representative True

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 2977843 ~ 2989763 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTTTGTGCGCAAAAACAAAACTAAAATAACAAATTTGTTGAATGGACTGAACAGAAGAAATGAACCAGCAAAGATGTCCACGTCAAAGAAGGACACAATGGTAGCTTGAAGGCGTTTACCAGCCAGAGCAAACTTTTCCGGAAAGTTCACTTTGGAAAGGTTTCGAACTCCAGAAACTAACACAAACCGAACTTCATTTTGACCTGATTTTGTTTGAAATGACATCACACCAGTTTGTCCTTTGATTTTGCTTGAAGTATATCAGGCCCAAGTAAGTCAAGTGAGTCAGTCACTTGCCGCCGTCTACTGGCAAAACTATGTAACCTGCACTAAAGTCATTGATAAACCCCCTTCATTAACATAG

Function

GO:

id name namespace
GO:0034446 substrate adhesion-dependent cell spreading biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305575 lncRNA downstream 27670 2949545 ~ 2950332 (-) True G269304
TU305574 lncRNA downstream 38835 2938708 ~ 2939167 (-) True G269303
TU305573 lncRNA downstream 39718 2937920 ~ 2938284 (-) True G269302
TU305516 lncRNA downstream 44456 2932150 ~ 2933546 (-) True G269253
TU305515 lncRNA downstream 48996 2924577 ~ 2929006 (-) True G269252
TU305614 lncRNA upstream 129696 3108288 ~ 3109555 (-) True G269337
TU305636 lncRNA upstream 325765 3304357 ~ 3305539 (-) False G269348
TU305744 lncRNA upstream 373008 3351600 ~ 3352903 (-) True G269424
TU305760 lncRNA upstream 418518 3397110 ~ 3397359 (-) True G269436
TU305764 lncRNA upstream 458546 3437138 ~ 3437390 (-) True G269440
CI01000065_02940142_02940429.mRNA mRNA downstream 37189 2940054 ~ 2940813 (-) True CI01000065_02940142_02940429
CI01000065_02820772_02829132.mRNA mRNA downstream 148870 2819712 ~ 2829132 (-) True CI01000065_02820772_02829132
CI01000065_02679973_02700843.mRNA mRNA downstream 276558 2679839 ~ 2701444 (-) True CI01000065_02679973_02700843
CI01000065_02358877_02366169.mRNA mRNA downstream 611833 2358853 ~ 2366169 (-) False CI01000065_02358877_02366169
CI01000065_02288372_02357728.mRNA mRNA downstream 620274 2288372 ~ 2357728 (-) False CI01000065_02288372_02357728
CI01000065_02992054_02993108.mRNA mRNA upstream 13223 2991815 ~ 2993167 (-) True CI01000065_02992054_02993108
CI01000065_03015397_03024204.mRNA mRNA upstream 36260 3014852 ~ 3024204 (-) True CI01000065_03015397_03024204
CI01000065_03037531_03045960.mRNA mRNA upstream 58769 3037361 ~ 3045960 (-) True CI01000065_03037531_03045960
CI01000065_03060532_03105332.mRNA mRNA upstream 80825 3059417 ~ 3106175 (-) True CI01000065_03060532_03105332
CI01000065_03113629_03136974.mRNA mRNA upstream 134866 3113458 ~ 3136974 (-) True CI01000065_03113629_03136974
TU303837 other downstream 2194341 783538 ~ 783661 (-) True G267748
TU303828 other downstream 2353345 622432 ~ 624657 (-) True CI01000065_00622545_00624625
TU303796 other downstream 2397975 554468 ~ 556828 (-) True G267718
TU303798 other downstream 2413788 554351 ~ 556828 (-) True G267718
TU303067 other downstream 2923615 54287 ~ 54387 (-) True G267025
TU305637 other upstream 329851 3308443 ~ 3312404 (-) False G269348
TU305628 other upstream 330196 3308788 ~ 3312404 (-) False G269348
TU305632 other upstream 330196 3308788 ~ 3312480 (-) True G269348
TU306020 other upstream 795288 3773880 ~ 3774294 (-) True G269679
TU305995 other upstream 814531 3807558 ~ 3810160 (-) False G269656

Expression Profile