RNA id: TU303616



Basic Information


Item Value
RNA id TU303616
length 443
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G267550
representative True

Chromosome Information


Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 992282 ~ 992724 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CATGATCCCAGATGAGGATCGTATAGATTTTAAAATCTTGCTAATTACTTACAAAGCACTAAATGGTTTAGCTCCCCAGTACCTGAGCGAGCTCTTAATTCATTATAGTCCTTCACGTCTATTGCGATCTCAGAATTCAGGCCAGCTGATAATACCTAGAATATCAAAATCAACCGCAGGCAGTAGATCCTTCTCCTATTTGGCACCTAAACTCTGGAACAATCTTCCTAGCATTGTTCGGGAAGCAGACACACTCTGTCAGTTTAAATCTAGTCTGAAAACGCATCTCTTTAACCTGGCATACACATAACACATTACCAATTTATGTTTTCAAATCTGTTAAAGGATTGTTAGGCTGCATAAATTAGGTCAGCCGGAACCGGGAACACTTCCTATAACACCTGATGTACTCGTTACATCAGAAGAAGAATCTCATCTACGCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU303520 lncRNA upstream 360838 631236 ~ 631444 (+) True G267457
TU303518 lncRNA upstream 400399 591522 ~ 591883 (+) True G267455
TU303517 lncRNA upstream 401063 591015 ~ 591219 (+) True G267454
TU303503 lncRNA upstream 480150 511690 ~ 512132 (+) True G267441
TU303500 lncRNA upstream 483869 508182 ~ 508413 (+) True G267438
TU303620 lncRNA downstream 3158 995882 ~ 996173 (+) True G267551
TU303626 lncRNA downstream 25126 1017850 ~ 1031776 (+) True G267557
TU303637 lncRNA downstream 49740 1042464 ~ 1042870 (+) True G267565
TU303647 lncRNA downstream 77107 1069831 ~ 1070218 (+) False G267573
TU303648 lncRNA downstream 77107 1069831 ~ 1070091 (+) True G267573
CI01000065_00873636_00877487.mRNA mRNA upstream 114795 873636 ~ 877487 (+) True CI01000065_00873636_00877487
CI01000065_00800809_00808759.mRNA mRNA upstream 183408 799876 ~ 808874 (+) True CI01000065_00800809_00808759
CI01000065_00750437_00764088.mRNA mRNA upstream 227985 750437 ~ 764297 (+) True CI01000065_00750437_00764088
CI01000065_00633526_00695106.mRNA mRNA upstream 297176 633526 ~ 695106 (+) True CI01000065_00633526_00695106
CI01000065_00625575_00629127.mRNA mRNA upstream 362988 625575 ~ 629294 (+) True CI01000065_00625575_00629127
CI01000065_01076737_01078446.mRNA mRNA downstream 84013 1076737 ~ 1079588 (+) True CI01000065_01076737_01078446
CI01000065_01452148_01608735.mRNA mRNA downstream 459424 1452148 ~ 1608735 (+) True CI01000065_01452148_01608735
CI01000065_01867964_01868983.mRNA mRNA downstream 875064 1867788 ~ 1869813 (+) True CI01000065_01867964_01868983
CI01000065_01938179_01949512.mRNA mRNA downstream 945361 1938085 ~ 1950751 (+) True CI01000065_01938179_01949512
CI01000065_02222213_02282352.mRNA mRNA downstream 1229305 2222029 ~ 2282432 (+) True CI01000065_02222213_02282352
TU303494 other upstream 209403 782283 ~ 782879 (+) True G267432
TU302970 other upstream 947616 43038 ~ 44666 (+) True G266932
TU303653 other downstream 89429 1082153 ~ 1082655 (+) True G267577
TU304676 other downstream 1246435 2239159 ~ 2239998 (+) True G268525
TU304991 other downstream 1616183 2608907 ~ 2638205 (+) True G268805
TU305428 other downstream 2466233 3458957 ~ 3462928 (+) True G269181
TU305478 other downstream 2560080 3552804 ~ 3553124 (+) False G269225

Expression Profile