RNA id: TU303637


Basic Information

Item Value
RNA id TU303637
length 407
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G267565
representative True

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 1042464 ~ 1042870 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATCAGTTTAGTTCTAACATGCCCTTCTTTAATAGGGGGGTAAGGATACTTAATGTATCAGATAATGAGACTAAGTTTGATACTTGCATGTCTCGCTCATTTGAATTAAAACTGTCCTGATGCAATTTGTGGAGGCTCCCGTTGAATCTTTGCTGATGTTGTCTTGATGAGAGAGAACCAGTTGGATTCAGAGGATCTTTGGTGAATAGAAGGTCAAGGCCGAAGCCTGGCACAAGCTTGGAGTTCCTTAGAAGCTTCTAGCACAGCATCATCTTCACATCAGCATTTTTCAATACAGGAAAAGAAGAGTCTGTGATCTTTGTGTTTCATGTTGTTGTTTTCATTGCTGAAGTAAGAGTGTTGAACTTTCTTCTCCCGTGTCCTGTTCTGAAAGGTCACAGTTGAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303626 lncRNA upstream 10688 1017850 ~ 1031776 (+) True G267557
TU303620 lncRNA upstream 46291 995882 ~ 996173 (+) True G267551
TU303616 lncRNA upstream 49740 992282 ~ 992724 (+) True G267550
TU303520 lncRNA upstream 411020 631236 ~ 631444 (+) True G267457
TU303518 lncRNA upstream 450581 591522 ~ 591883 (+) True G267455
TU303647 lncRNA downstream 26961 1069831 ~ 1070218 (+) False G267573
TU303648 lncRNA downstream 26961 1069831 ~ 1070091 (+) True G267573
TU303650 lncRNA downstream 28934 1071804 ~ 1072054 (+) True G267574
TU303631 lncRNA downstream 80433 1123303 ~ 1124325 (+) True G267561
TU304138 lncRNA downstream 324359 1367229 ~ 1416137 (+) True G268021
CI01000065_00873636_00877487.mRNA mRNA upstream 164977 873636 ~ 877487 (+) True CI01000065_00873636_00877487
CI01000065_00800809_00808759.mRNA mRNA upstream 233590 799876 ~ 808874 (+) True CI01000065_00800809_00808759
CI01000065_00750437_00764088.mRNA mRNA upstream 278167 750437 ~ 764297 (+) True CI01000065_00750437_00764088
CI01000065_00633526_00695106.mRNA mRNA upstream 347358 633526 ~ 695106 (+) True CI01000065_00633526_00695106
CI01000065_00625575_00629127.mRNA mRNA upstream 413170 625575 ~ 629294 (+) True CI01000065_00625575_00629127
CI01000065_01076737_01078446.mRNA mRNA downstream 33867 1076737 ~ 1079588 (+) True CI01000065_01076737_01078446
CI01000065_01452148_01608735.mRNA mRNA downstream 409278 1452148 ~ 1608735 (+) True CI01000065_01452148_01608735
CI01000065_01867964_01868983.mRNA mRNA downstream 824918 1867788 ~ 1869813 (+) True CI01000065_01867964_01868983
CI01000065_01938179_01949512.mRNA mRNA downstream 895215 1938085 ~ 1950751 (+) True CI01000065_01938179_01949512
CI01000065_02222213_02282352.mRNA mRNA downstream 1179159 2222029 ~ 2282432 (+) True CI01000065_02222213_02282352
TU303494 other upstream 259585 782283 ~ 782879 (+) True G267432
TU302970 other upstream 997798 43038 ~ 44666 (+) True G266932
TU303653 other downstream 39283 1082153 ~ 1082655 (+) True G267577
TU304676 other downstream 1196289 2239159 ~ 2239998 (+) True G268525
TU304991 other downstream 1566037 2608907 ~ 2638205 (+) True G268805
TU305428 other downstream 2416087 3458957 ~ 3462928 (+) True G269181
TU305478 other downstream 2509934 3552804 ~ 3553124 (+) False G269225

Expression Profile