Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU304412 |
| length | 580 |
| lncRNA type | inter_gene |
| GC content | 0.45 |
| exon number | 3 |
| gene id | G268270 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000065 |
| NCBI id | null |
| chromosome length | 4956624 |
| location | 1972364 ~ 1974589 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU304419 | lncRNA | upstream | 11484 | 1956365 ~ 1960880 (+) | False | G268274 |
| TU304417 | lncRNA | upstream | 11484 | 1960295 ~ 1960880 (+) | True | G268274 |
| TU304394 | lncRNA | upstream | 140730 | 1831429 ~ 1831634 (+) | True | G268256 |
| TU304356 | lncRNA | upstream | 193079 | 1776226 ~ 1779285 (+) | True | G268222 |
| TU304205 | lncRNA | upstream | 272411 | 1698719 ~ 1699953 (+) | True | G268083 |
| TU304446 | lncRNA | downstream | 922 | 1975511 ~ 1982735 (+) | True | G268301 |
| TU304509 | lncRNA | downstream | 26482 | 2001071 ~ 2001301 (+) | True | G268361 |
| TU304515 | lncRNA | downstream | 32451 | 2007040 ~ 2007290 (+) | True | G268367 |
| TU304522 | lncRNA | downstream | 37950 | 2012539 ~ 2012950 (+) | True | G268374 |
| TU304540 | lncRNA | downstream | 59949 | 2034538 ~ 2034741 (+) | True | G268392 |
| CI01000065_01938179_01949512.mRNA | mRNA | upstream | 21613 | 1938085 ~ 1950751 (+) | True | CI01000065_01938179_01949512 |
| CI01000065_01867964_01868983.mRNA | mRNA | upstream | 102551 | 1867788 ~ 1869813 (+) | True | CI01000065_01867964_01868983 |
| CI01000065_01452148_01608735.mRNA | mRNA | upstream | 363629 | 1452148 ~ 1608735 (+) | True | CI01000065_01452148_01608735 |
| CI01000065_01076737_01078446.mRNA | mRNA | upstream | 892776 | 1076737 ~ 1079588 (+) | True | CI01000065_01076737_01078446 |
| CI01000065_00873636_00877487.mRNA | mRNA | upstream | 1094877 | 873636 ~ 877487 (+) | True | CI01000065_00873636_00877487 |
| CI01000065_02222213_02282352.mRNA | mRNA | downstream | 247440 | 2222029 ~ 2282432 (+) | True | CI01000065_02222213_02282352 |
| CI01000065_02442834_02444552.mRNA | mRNA | downstream | 467070 | 2441659 ~ 2445951 (+) | True | CI01000065_02442834_02444552 |
| CI01000065_02562189_02562709.mRNA | mRNA | downstream | 587600 | 2562189 ~ 2562738 (+) | True | CI01000065_02562189_02562709 |
| CI01000065_02714893_02755256.mRNA | mRNA | downstream | 738852 | 2713441 ~ 2755370 (+) | True | CI01000065_02714893_02755256 |
| CI01000065_02770419_02775297.mRNA | mRNA | downstream | 795460 | 2770049 ~ 2776165 (+) | True | CI01000065_02770419_02775297 |
| TU303653 | other | upstream | 889709 | 1082153 ~ 1082655 (+) | True | G267577 |
| TU303494 | other | upstream | 1189485 | 782283 ~ 782879 (+) | True | G267432 |
| TU302970 | other | upstream | 1927698 | 43038 ~ 44666 (+) | True | G266932 |
| TU304676 | other | downstream | 264570 | 2239159 ~ 2239998 (+) | True | G268525 |
| TU304991 | other | downstream | 634318 | 2608907 ~ 2638205 (+) | True | G268805 |
| TU305428 | other | downstream | 1484368 | 3458957 ~ 3462928 (+) | True | G269181 |
| TU305478 | other | downstream | 1578215 | 3552804 ~ 3553124 (+) | False | G269225 |
