Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU305632 |
| length | 809 |
| RNA type | TUCP |
| GC content | 0.45 |
| exon number | 6 |
| gene id | G269348 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000065 |
| NCBI id | null |
| chromosome length | 4956624 |
| location | 3304357 ~ 3312480 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU305636 | lncRNA | downstream | 3249 | 3304357 ~ 3305539 (-) | False | G269348 |
| TU305614 | lncRNA | downstream | 199233 | 3108288 ~ 3109555 (-) | True | G269337 |
| TU305587 | lncRNA | downstream | 330196 | 2978002 ~ 2978592 (-) | True | CI01000065_02979795_02989709 |
| TU305575 | lncRNA | downstream | 358456 | 2949545 ~ 2950332 (-) | True | G269304 |
| TU305574 | lncRNA | downstream | 369621 | 2938708 ~ 2939167 (-) | True | G269303 |
| TU305744 | lncRNA | upstream | 39120 | 3351600 ~ 3352903 (-) | True | G269424 |
| TU305760 | lncRNA | upstream | 84630 | 3397110 ~ 3397359 (-) | True | G269436 |
| TU305764 | lncRNA | upstream | 124658 | 3437138 ~ 3437390 (-) | True | G269440 |
| TU305713 | lncRNA | upstream | 178092 | 3490572 ~ 3491380 (-) | True | G269399 |
| TU305770 | lncRNA | upstream | 183608 | 3496088 ~ 3496312 (-) | True | G269446 |
| CI01000065_03159239_03164326.mRNA | mRNA | downstream | 144462 | 3159239 ~ 3164326 (-) | True | CI01000065_03159239_03164326 |
| CI01000065_03113629_03136974.mRNA | mRNA | downstream | 171814 | 3113458 ~ 3136974 (-) | True | CI01000065_03113629_03136974 |
| CI01000065_03060532_03105332.mRNA | mRNA | downstream | 202613 | 3059417 ~ 3106175 (-) | True | CI01000065_03060532_03105332 |
| CI01000065_03037531_03045960.mRNA | mRNA | downstream | 262828 | 3037361 ~ 3045960 (-) | True | CI01000065_03037531_03045960 |
| CI01000065_03015397_03024204.mRNA | mRNA | downstream | 284584 | 3014852 ~ 3024204 (-) | True | CI01000065_03015397_03024204 |
| CI01000065_03369379_03371121.mRNA | mRNA | upstream | 56439 | 3368919 ~ 3371441 (-) | True | CI01000065_03369379_03371121 |
| CI01000065_03373810_03377138.mRNA | mRNA | upstream | 60223 | 3372703 ~ 3377138 (-) | True | CI01000065_03373810_03377138 |
| CI01000065_03385522_03396519.mRNA | mRNA | upstream | 73042 | 3385522 ~ 3397081 (-) | True | CI01000065_03385522_03396519 |
| CI01000065_03413002_03434286.mRNA | mRNA | upstream | 100249 | 3412729 ~ 3434286 (-) | True | CI01000065_03413002_03434286 |
| CI01000065_03442791_03477709.mRNA | mRNA | upstream | 130115 | 3442595 ~ 3477709 (-) | True | CI01000065_03442791_03477709 |
| TU303837 | other | downstream | 2525127 | 783538 ~ 783661 (-) | True | G267748 |
| TU303828 | other | downstream | 2684131 | 622432 ~ 624657 (-) | True | CI01000065_00622545_00624625 |
| TU303796 | other | downstream | 2728761 | 554468 ~ 556828 (-) | True | G267718 |
| TU303798 | other | downstream | 2744574 | 554351 ~ 556828 (-) | True | G267718 |
| TU303067 | other | downstream | 3254401 | 54287 ~ 54387 (-) | True | G267025 |
| TU306020 | other | upstream | 461400 | 3773880 ~ 3774294 (-) | True | G269679 |
| TU305995 | other | upstream | 480643 | 3807558 ~ 3810160 (-) | False | G269656 |
| TU305996 | other | upstream | 480766 | 3807558 ~ 3810243 (-) | True | G269656 |
