RNA id: TU313091



Basic Information


Item Value
RNA id TU313091
length 313
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G275992
representative True

Chromosome Information


Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 4135088 ~ 4135400 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GACATATGAGTGCTGCCAGCATTGCTGCAGAGGTTGATAGGCAGATATTGTGGTTAGTGTACTGATTAATAATGATTTATGGAGATTCTGTAACATACACCAGAGCTCTGAGAACAAAAACAAAACTACCAACACCTTCAGTGTTGGATGCAACATGAAGATCCTCATTTCAACCATAACCTTTGCACACTGCAGACGTGAGGTATGTCAGACCCCTATAGAGATGGTGTGGCCTTTTTCACCTCATCCGGATTCCAGTCATCTCTGCTGTGATAAACAGCTTTGAAGAAACATATCAGAGTAGTAGATCACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU313081 lncRNA downstream 46730 4087961 ~ 4088358 (-) True G275982
TU313080 lncRNA downstream 47343 4087379 ~ 4087745 (-) True G275981
TU313079 lncRNA downstream 47950 4086835 ~ 4087138 (-) True G275980
TU313078 lncRNA downstream 49360 4084839 ~ 4085728 (-) True G275979
TU312921 lncRNA downstream 53667 4080282 ~ 4081421 (-) True G275825
TU312866 lncRNA upstream 7768 4143168 ~ 4215690 (-) True G275770
TU312853 lncRNA upstream 22583 4162063 ~ 4162415 (-) True G275757
TU312904 lncRNA upstream 72192 4207592 ~ 4209649 (-) True G275808
TU313149 lncRNA upstream 391682 4527082 ~ 4527880 (-) True G276042
TU313159 lncRNA upstream 419809 4555209 ~ 4557664 (-) True G276052
CI01000069_04129986_04133876.mRNA mRNA downstream 1165 4129725 ~ 4133923 (-) True CI01000069_04129986_04133876
CI01000069_03986480_03988243.mRNA mRNA downstream 146476 3985177 ~ 3988612 (-) True CI01000069_03986480_03988243
CI01000069_03972492_03982847.mRNA mRNA downstream 152131 3972090 ~ 3982957 (-) True CI01000069_03972492_03982847
CI01000069_03939251_03942780.mRNA mRNA downstream 191993 3939204 ~ 3943095 (-) True CI01000069_03939251_03942780
CI01000069_03871972_03884153.mRNA mRNA downstream 250935 3871925 ~ 3884153 (-) True CI01000069_03871972_03884153
CI01000069_04140312_04141990.mRNA mRNA upstream 4214 4139614 ~ 4142844 (-) True CI01000069_04140312_04141990
CI01000069_04160575_04161329.mRNA mRNA upstream 24586 4159986 ~ 4161329 (-) False CI01000069_04160575_04161329
CI01000069_04171520_04172634.mRNA mRNA upstream 35935 4171335 ~ 4172634 (-) True CI01000069_04171520_04172634
CI01000069_04174676_04182006.mRNA mRNA upstream 38391 4173791 ~ 4182006 (-) True CI01000069_04174676_04182006
CI01000069_04184836_04186691.mRNA mRNA upstream 48815 4184215 ~ 4186836 (-) True CI01000069_04184836_04186691
TU312842 other downstream 328011 3805663 ~ 3805758 (-) True G275746
TU312875 other downstream 365868 3765673 ~ 3769220 (-) True CI01000069_03768812_03787588
TU312899 other downstream 558753 3563293 ~ 3576335 (-) True CI01000069_03571631_03573352
TU312851 other downstream 708714 3426149 ~ 3426374 (-) True G275755
TU312791 other downstream 1056920 2992504 ~ 3078168 (-) True G275699
TU313201 other upstream 804121 4942073 ~ 4942199 (-) True G276079
TU313215 other upstream 833895 4985966 ~ 4986424 (-) True CI01000069_04985959_04986408

Expression Profile