RNA id: TU331448


Basic Information

Item Value
RNA id TU331448
length 401
lncRNA type inter_gene
GC content 0.30
exon number 2
gene id G292114
representative True

Chromosome Information

Item Value
chromosome id CI01000080
NCBI id null
chromosome length 5175454
location 1647565 ~ 1648244 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACACACCTCAGCACTGGGCTGAAAGATTGTAAAAGCTTCTAAGCTTTATGGGTTCTTCAACGGCCATTGGCAATATCTATTTGCATACTACATTCATAGTATTTTTTATATTATATAAAATATATACTCTACTGTTCAAAAGTTTGGGATTGGTAAGATTTTTTCATGTTTTTTGCATGTATTAAAAAAAATATATATATATATATATAAACAATACTGATGAGATTAAATTGCCACTTATTTTAGATTCAGTATATTTCTCAAATATATTGTGCAATCAGTATTAACTTGGGATGCACAATATACATATATGTACACACTGTAAAGTTTCAGGAGTGACAACCGCATTTAAATGCGTGGAGTGAGTTCCCTAAATTTTCGTTCTATGAGTGTACAGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU331381 lncRNA downstream 15293 1632064 ~ 1632272 (-) True G292085
TU331341 lncRNA downstream 134960 1512333 ~ 1512605 (-) True G292050
TU331334 lncRNA downstream 152626 1494581 ~ 1494939 (-) True G292044
TU331333 lncRNA downstream 154762 1490295 ~ 1492803 (-) True G292043
TU331330 lncRNA downstream 160428 1486802 ~ 1487137 (-) True G292040
TU331418 lncRNA upstream 20795 1669039 ~ 1693395 (-) True G292089
TU331457 lncRNA upstream 43136 1691380 ~ 1691674 (-) True G292123
TU331437 lncRNA upstream 74054 1722298 ~ 1723134 (-) True G292103
TU331433 lncRNA upstream 75105 1723349 ~ 1724367 (-) True G292099
TU331436 lncRNA upstream 76451 1724695 ~ 1725025 (-) True G292102
CI01000080_01584991_01585618.mRNA mRNA downstream 61856 1583859 ~ 1585709 (-) True CI01000080_01584991_01585618
CI01000080_01542470_01546061.mRNA mRNA downstream 100782 1542239 ~ 1546783 (-) True CI01000080_01542470_01546061
CI01000080_01514171_01520784.mRNA mRNA downstream 126727 1514136 ~ 1520838 (-) True CI01000080_01514171_01520784
CI01000080_01500308_01505160.mRNA mRNA downstream 142151 1499877 ~ 1505414 (-) True CI01000080_01500308_01505160
CI01000080_01442459_01464557.mRNA mRNA downstream 180559 1441985 ~ 1467006 (-) True CI01000080_01442459_01464557
CI01000080_01726615_01730435.mRNA mRNA upstream 77745 1725989 ~ 1730435 (-) True CI01000080_01726615_01730435
CI01000080_01732531_01763618.mRNA mRNA upstream 84146 1732390 ~ 1763618 (-) True CI01000080_01732531_01763618
CI01000080_01954854_01959161.mRNA mRNA upstream 306447 1954691 ~ 1959324 (-) True CI01000080_01954854_01959161
CI01000080_01980939_01981859.mRNA mRNA upstream 332060 1980304 ~ 1982199 (-) False CI01000080_01980939_01981859
CI01000080_01987220_01990307.mRNA mRNA upstream 338254 1986498 ~ 1990697 (-) True CI01000080_01987220_01990307
TU329309 other downstream 1239421 407885 ~ 408144 (-) True G290314
TU329248 other downstream 1318048 327689 ~ 329517 (-) True G290261
TU329180 other downstream 1367718 272397 ~ 279847 (-) True G290197
TU331720 other upstream 869834 2518078 ~ 2525409 (-) True G292349
TU331774 other upstream 1085343 2733587 ~ 2743246 (-) True G292387
TU331945 other upstream 1560741 3208985 ~ 3218158 (-) False G292516
TU331946 other upstream 1560990 3209234 ~ 3218158 (-) False G292516
TU331947 other upstream 1560990 3209234 ~ 3218403 (-) False G292516

Expression Profile