RNA id: TU331430


Basic Information

Item Value
RNA id TU331430
length 562
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G292096
representative True

Chromosome Information

Item Value
chromosome id CI01000080
NCBI id null
chromosome length 5175454
location 1812411 ~ 1812972 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AACGACTTTGTTCAACAAGTTCTTCTCTTCTGTCTGGGCCACTGTGTTTGCAAGCAGAGGAAGAAGCGCTCTGTACATAAACAGTCTTTGACTGGGAACAGCTGTTGGTTTCAGAAGTCGTTGAGTGTTTCCTTGACCTGGTTTGAAGTCGTCTGGTGAAAAATGTCCACTGCACAACTTCATTTGTTTGACGTGGCGGTAAATCAAGCGGTAAATCAACATCCTGATGAACAGCCAGCAGCCATAGCTTCAGTCGCTCAGAATCATTTGATGGGAAATGGTGAAATGTAAGCCATTCATTTTGCGGCTTTGATAAGGCACTTTTACATACTCTTATTCATTTCTCATGGTTCAGGCATCCAGGAAATGCACACTTTAGCACCATTTTAAACACTACACCAAGACCTAAAGCATAATAAATGTAGAATTCAATAGCTTACATACAGCGCGTCTTCCTCTGCTTGCAAACACAGTGCTGCGCTTCCGGGTCATATGTCAGAACGCCAGCTTCTACGTCATGGTGTTTTTGTGAGTACACGTCAGAGGCCCAGACAGAAGAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU331436 lncRNA downstream 87386 1724695 ~ 1725025 (-) True G292102
TU331433 lncRNA downstream 88044 1723349 ~ 1724367 (-) True G292099
TU331437 lncRNA downstream 89277 1722298 ~ 1723134 (-) True G292103
TU331418 lncRNA downstream 119016 1669039 ~ 1693395 (-) True G292089
TU331457 lncRNA downstream 120737 1691380 ~ 1691674 (-) True G292123
TU331518 lncRNA upstream 149566 1962538 ~ 1966566 (-) True G292176
TU331519 lncRNA upstream 166774 1979746 ~ 1981786 (-) True CI01000080_01980939_01981859
TU331550 lncRNA upstream 179742 1992714 ~ 1992994 (-) True G292197
TU331569 lncRNA upstream 277033 2090005 ~ 2090238 (-) True G292214
TU331602 lncRNA upstream 397871 2210843 ~ 2211065 (-) True G292242
CI01000080_01732531_01763618.mRNA mRNA downstream 48793 1732390 ~ 1763618 (-) True CI01000080_01732531_01763618
CI01000080_01726615_01730435.mRNA mRNA downstream 81976 1725989 ~ 1730435 (-) True CI01000080_01726615_01730435
CI01000080_01584991_01585618.mRNA mRNA downstream 226702 1583859 ~ 1585709 (-) True CI01000080_01584991_01585618
CI01000080_01542470_01546061.mRNA mRNA downstream 265628 1542239 ~ 1546783 (-) True CI01000080_01542470_01546061
CI01000080_01514171_01520784.mRNA mRNA downstream 291573 1514136 ~ 1520838 (-) True CI01000080_01514171_01520784
CI01000080_01954854_01959161.mRNA mRNA upstream 141719 1954691 ~ 1959324 (-) True CI01000080_01954854_01959161
CI01000080_01980939_01981859.mRNA mRNA upstream 167332 1980304 ~ 1982199 (-) False CI01000080_01980939_01981859
CI01000080_01987220_01990307.mRNA mRNA upstream 173526 1986498 ~ 1990697 (-) True CI01000080_01987220_01990307
CI01000080_01993914_01996596.mRNA mRNA upstream 180476 1993448 ~ 1996622 (-) True CI01000080_01993914_01996596
CI01000080_02015292_02021186.mRNA mRNA upstream 201412 2014384 ~ 2021587 (-) True CI01000080_02015292_02021186
TU331407 other downstream 140491 1635762 ~ 1671920 (-) False G292089
TU331420 other downstream 149393 1635762 ~ 1663018 (-) False G292089
TU329309 other downstream 1404267 407885 ~ 408144 (-) True G290314
TU329248 other downstream 1482894 327689 ~ 329517 (-) True G290261
TU329180 other downstream 1532564 272397 ~ 279847 (-) True G290197
TU331720 other upstream 705106 2518078 ~ 2525409 (-) True G292349
TU331774 other upstream 920615 2733587 ~ 2743246 (-) True G292387
TU331945 other upstream 1396013 3208985 ~ 3218158 (-) False G292516
TU331946 other upstream 1396262 3209234 ~ 3218158 (-) False G292516
TU331947 other upstream 1396262 3209234 ~ 3218403 (-) False G292516

Expression Profile