RNA id: TU331809


Basic Information

Item Value
RNA id TU331809
length 347
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G292409
representative False

Chromosome Information

Item Value
chromosome id CI01000080
NCBI id null
chromosome length 5175454
location 2753135 ~ 2754693 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCGAAAAGGAGGGAGAGACAGTGCGCATGGGACTGAGAGATTAACACGGGGTGTGCGTGGCATTCGGCTTGCCCGAAAGTGTGTGCAGTCTTATAAAAAACTAGATCCGACATTCAAAAACGCGATAACGAGGACGGAAGGAACATGCAGAGAACTTCTGTCAGGATATGGATGCAAGAACGTTCCCCCACCTGCACACACTCCGGCCCCCGTCTCTGTCCCACCACAAAGGCCCCTCCTCTGGCCAGATCAAGGGGCTGGGTCCCATGAATTAATTACTGTCCGCCTCTCCGCCTCCGGGTTATTAATAGTATGAAATGAGCAATAAAAGGGCTTAGGAGTGGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU331769 lncRNA downstream 17128 2733587 ~ 2736867 (-) False G292387
TU331709 lncRNA downstream 236815 2491114 ~ 2517180 (-) True G292339
TU331622 lncRNA downstream 487889 2263614 ~ 2266106 (-) True G292262
TU331602 lncRNA downstream 542930 2210843 ~ 2211065 (-) True G292242
TU331569 lncRNA downstream 663757 2090005 ~ 2090238 (-) True G292214
TU331815 lncRNA upstream 1181 2755522 ~ 2755838 (-) True G292411
TU331816 lncRNA upstream 4774 2759115 ~ 2759350 (-) True G292412
TU331822 lncRNA upstream 23730 2778071 ~ 2778339 (-) True G292418
TU331824 lncRNA upstream 36445 2790786 ~ 2811392 (-) True G292420
TU331828 lncRNA upstream 57556 2811897 ~ 2814894 (-) True G292423
CI01000080_02675714_02724087.mRNA mRNA downstream 29908 2675714 ~ 2724087 (-) True CI01000080_02675714_02724087
CI01000080_02626826_02665868.mRNA mRNA downstream 88127 2626586 ~ 2665868 (-) True CI01000080_02626826_02665868
CI01000080_02396817_02403243.mRNA mRNA downstream 350752 2396817 ~ 2403243 (-) True CI01000080_02396817_02403243
CI01000080_02377623_02390372.mRNA mRNA downstream 362714 2376786 ~ 2391281 (-) True CI01000080_02377623_02390372
CI01000080_02371817_02374191.mRNA mRNA downstream 379804 2371747 ~ 2374191 (-) True CI01000080_02371817_02374191
CI01000080_02890744_02893801.mRNA mRNA upstream 136193 2890534 ~ 2893801 (-) True CI01000080_02890744_02893801
CI01000080_02901179_02916041.mRNA mRNA upstream 146774 2901115 ~ 2917643 (-) True CI01000080_02901179_02916041
CI01000080_02998252_03001018.mRNA mRNA upstream 243767 2998108 ~ 3001673 (-) True CI01000080_02998252_03001018
CI01000080_03135523_03147452.mRNA mRNA upstream 380671 3135012 ~ 3147452 (-) True CI01000080_03135523_03147452
CI01000080_03187019_03196643.mRNA mRNA upstream 432150 3186491 ~ 3196643 (-) True CI01000080_03187019_03196643
TU331774 other downstream 10749 2733587 ~ 2743246 (-) True G292387
TU331720 other downstream 228586 2518078 ~ 2525409 (-) True G292349
TU331407 other downstream 1082075 1635762 ~ 1671920 (-) False G292089
TU331420 other downstream 1090977 1635762 ~ 1663018 (-) False G292089
TU329309 other downstream 2345851 407885 ~ 408144 (-) True G290314
TU331945 other upstream 454644 3208985 ~ 3218158 (-) False G292516
TU331946 other upstream 454893 3209234 ~ 3218158 (-) False G292516
TU331947 other upstream 454893 3209234 ~ 3218403 (-) False G292516
TU332208 other upstream 961140 3715481 ~ 3728010 (-) True G292714

Expression Profile