RNA id: TU331824


Basic Information

Item Value
RNA id TU331824
length 608
lncRNA type read_through
GC content 0.44
exon number 3
gene id G292420
representative True

Chromosome Information

Item Value
chromosome id CI01000080
NCBI id null
chromosome length 5175454
location 2790786 ~ 2811392 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATAGTGGCTTGTCAGTCTGAATAAAGAGAAAACCATTGACAGTAGTGACTGGGATTTTTTTATATGCAGTGAAAGCAGAAGAAATCGCCTGAAGGAAGACATATTTGTCCTCTTTTGTGAAATCTACAGGCATGATCTGGGAAAAAGAAAAAGGGTTGATGGACTGAGACAAAATGGGCAGTTTCCCCCCTTTCCAACAGGGAGGACATCTTTATTCCTTCCCCGGCTTGCGGGTTTCCTATTCAGCTCTCTTCAAAATAATGCCGGCTGAATGAAAAGTGCTGCAAATCAATCTTTCATGGTGTTTTTGAGGGCAATTTGACATCCATGCACTCTTCTTTTCTTTGAGATAAGTACAAGGGGAAAAAACTGGACAAGGATGGGGTCTGGCGAGTGGGGAACTTCCAAAGAGAGATGCGAGGAGAGCGCTGAGGAGAATATAGGACAAGTGGTGAGAGGGTCAGAGAGTTGGCAAATTCCCATGTTAGCCAGACGCTCCATTCTCCAACTGTTTGCCATTTCAAGGTCCTTTTTGCATTTTTGCTGAAAGGACTCCAGCATCTCTGAGACTTAATGGATGGCCCGACAAATAAAAATCTCTGCATA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU331822 lncRNA downstream 12447 2778071 ~ 2778339 (-) True G292418
TU331816 lncRNA downstream 31436 2759115 ~ 2759350 (-) True G292412
TU331815 lncRNA downstream 34948 2755522 ~ 2755838 (-) True G292411
TU331807 lncRNA downstream 36093 2754134 ~ 2754693 (-) False G292409
TU331808 lncRNA downstream 36264 2754134 ~ 2754522 (-) True G292409
TU331828 lncRNA upstream 505 2811897 ~ 2814894 (-) True G292423
TU331825 lncRNA upstream 17721 2829113 ~ 2831707 (-) True G292421
TU331840 lncRNA upstream 20562 2831954 ~ 2832723 (-) True G292435
TU331854 lncRNA upstream 21819 2833211 ~ 2833517 (-) True G292449
TU331856 lncRNA upstream 23436 2834828 ~ 2835176 (-) True G292451
CI01000080_02675714_02724087.mRNA mRNA downstream 66699 2675714 ~ 2724087 (-) True CI01000080_02675714_02724087
CI01000080_02626826_02665868.mRNA mRNA downstream 124918 2626586 ~ 2665868 (-) True CI01000080_02626826_02665868
CI01000080_02396817_02403243.mRNA mRNA downstream 387543 2396817 ~ 2403243 (-) True CI01000080_02396817_02403243
CI01000080_02377623_02390372.mRNA mRNA downstream 399505 2376786 ~ 2391281 (-) True CI01000080_02377623_02390372
CI01000080_02371817_02374191.mRNA mRNA downstream 416595 2371747 ~ 2374191 (-) True CI01000080_02371817_02374191
CI01000080_02890744_02893801.mRNA mRNA upstream 79142 2890534 ~ 2893801 (-) True CI01000080_02890744_02893801
CI01000080_02901179_02916041.mRNA mRNA upstream 89723 2901115 ~ 2917643 (-) True CI01000080_02901179_02916041
CI01000080_02998252_03001018.mRNA mRNA upstream 186716 2998108 ~ 3001673 (-) True CI01000080_02998252_03001018
CI01000080_03135523_03147452.mRNA mRNA upstream 323620 3135012 ~ 3147452 (-) True CI01000080_03135523_03147452
CI01000080_03187019_03196643.mRNA mRNA upstream 375099 3186491 ~ 3196643 (-) True CI01000080_03187019_03196643
TU331774 other downstream 47540 2733587 ~ 2743246 (-) True G292387
TU331720 other downstream 265377 2518078 ~ 2525409 (-) True G292349
TU331407 other downstream 1118866 1635762 ~ 1671920 (-) False G292089
TU331420 other downstream 1127768 1635762 ~ 1663018 (-) False G292089
TU329309 other downstream 2382642 407885 ~ 408144 (-) True G290314
TU331945 other upstream 397593 3208985 ~ 3218158 (-) False G292516
TU331946 other upstream 397842 3209234 ~ 3218158 (-) False G292516
TU331947 other upstream 397842 3209234 ~ 3218403 (-) False G292516
TU332208 other upstream 904089 3715481 ~ 3728010 (-) True G292714

Expression Profile