RNA id: TCONS_00017627


Basic Information

Item Value
RNA id TCONS_00017627
length 404
RNA type processed_transcript
GC content 0.51
exon number 2
gene id XLOC_008922
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 1825172 ~ 1844048 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGGACAGCCGCAgatttggagatgatgaaggctCTGACCGGTCTGAGGGTTACAGGGGTCGGGGGCGTGGAGGTTATGACCGCGGAGGCTATGACAGAGGTGGCCGCGGAGGCCCACCCTCCGGTATGGGGTGTCAAAGTGAGTGAAATTAAAGTTGGACCTCATAATGGACCTCACTCATAATGGAAGGAAAGCGTGCGCTCGTCTACACGAGTGCGTCGACAGTTAGCTTCAATTGATGCTAATCTAAAGAGGGAGCAGGGAGGTTGTTCTCCGTTGCTCTTCTCTGGTTTTAGTTGCATCGGTCTCAGAGTGCACGCTCAATCTCAATCTTAAACCCAAAATTCTAATTTGCCTAATCGGTTTCGATCTGAAATGATTCATGCACATTGGGCCGTCATCT

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003712 transcription coregulator activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03022 Basal transcription factors
ko05202 Transcriptional misregulation in cancer
ko03021 Transcription machinery
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-061215-102 Predicted to enable RNA binding activity and transcription coregulator activity. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in chondrosarcoma and extraskeletal myxoid chondrosarcoma. Orthologous to human TAF15 (TATA-box binding protein associated factor 15).

Ensembl:

ensembl_id ENSDART00000156283

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00017624 lncRNA downstream 149 1830270 ~ 1834822 (-) False XLOC_008922
TCONS_00017613 lncRNA downstream 109487 1721587 ~ 1725484 (-) False XLOC_008918
TCONS_00017607 lncRNA downstream 223278 1606849 ~ 1611693 (-) False XLOC_008915
TCONS_00017604 lncRNA downstream 244176 1589813 ~ 1590795 (-) False XLOC_008914
TCONS_00017602 lncRNA downstream 300752 1523472 ~ 1534219 (-) True XLOC_008912
TCONS_00017629 lncRNA upstream 17140 1855023 ~ 1885239 (-) True XLOC_008923
TCONS_00017640 lncRNA upstream 485783 2323666 ~ 2328145 (-) False XLOC_008928
TCONS_00019112 lncRNA upstream 485783 2323666 ~ 2328284 (-) True XLOC_008928
TCONS_00017644 lncRNA upstream 679900 2517783 ~ 2519603 (-) True XLOC_008930
TCONS_00018809 lncRNA upstream 752498 2590381 ~ 2596121 (-) True XLOC_008931
TCONS_00017619 mRNA downstream 12423 1778773 ~ 1822548 (-) False XLOC_008921
TCONS_00017620 mRNA downstream 12423 1804823 ~ 1822548 (-) False XLOC_008921
TCONS_00017621 mRNA downstream 12805 1812565 ~ 1822166 (-) True XLOC_008921
TCONS_00017617 mRNA downstream 69834 1749843 ~ 1765137 (-) False XLOC_008920
TCONS_00017618 mRNA downstream 69873 1756141 ~ 1765098 (-) True XLOC_008920
TCONS_00017628 mRNA upstream 9252 1847135 ~ 1885247 (-) False XLOC_008923
TCONS_00017630 mRNA upstream 59492 1897375 ~ 2010926 (-) False XLOC_008924
TCONS_00017631 mRNA upstream 65065 1902948 ~ 1941042 (-) False XLOC_008924
TCONS_00017632 mRNA upstream 93105 1930988 ~ 1941184 (-) False XLOC_008924
TCONS_00017633 mRNA upstream 116650 1954533 ~ 1962326 (-) False XLOC_008924
TCONS_00017597 other downstream 513065 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017537 other downstream 1409215 425695 ~ 425756 (-) True XLOC_008873
TCONS_00017535 other downstream 1485404 349451 ~ 349567 (-) True XLOC_008870
TCONS_00017639 other upstream 428086 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017647 other upstream 787145 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017655 other upstream 898500 2736383 ~ 2736498 (-) True XLOC_008940
TCONS_00017689 other upstream 2266525 4104408 ~ 4104526 (-) True XLOC_008968
TCONS_00017694 other upstream 2527275 4365158 ~ 4365272 (-) True XLOC_008973

Expression Profile

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