RNA id: TCONS_00019114


Basic Information

Item Value
RNA id TCONS_00019114
length 2296
lncRNA type inter_gene
GC content 0.31
exon number 2
gene id XLOC_008942
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 2813516 ~ 2816142 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTCATTTGAATCTGGCCAACAGATACTATGCGTACTGTAAGAGAACAAACgaaaagtttagatgcaaaaacctctaaaggcCATTTGATATTTTGCTCTAAAATTAGAATTTTTCTCCAACTCTTGTGGATAGGCTCAATAATGTTACATTTATAGTGAAGGAAAGGTTCTGTTCATTGCCTTTcaagtaaaataactgaacatgAACAGCAGGTTGAGATAAATTGTcattttagatggcatttagagattttttggcatctgaactcttcatatattccCCAAATTTCATCCAAAATGTTCGAAATAAACACATCACctgcaattttttttatacatttaaacataTCGTAGGTCATTAAAGCAATTTATgtaatacatttaaacataTCGTAGGTCATTAAAGCAATTTATGTAATACATTTGACTTTTTCAGgacttctttttttcttatttattataacTACTGCTGAACATTTCCCTTAGAATGAGcgtattcaattaaattaaattgagttgagtttttttgtaattgttataAATAGCTACTAAGTAACATCAGAGCAGCTATAATGTTAAAGTGCAATAGCTAAGAACGTTTCAATAGCCGCAATCTTCTTTTTGACTAATAAACAGATTCGATTTTTGTTTTTCGACTCAGCGCTACCTCAcgccaatttgtaactttttgatttagtgacaatttttttgtggctgcaaatttaaatttttcaaaacaaatcaGCACTCCTTTTTTCTTATTATATCTATTGCTGAACATTTCCCTTAGAATGagcttattaaattaaattgagttTATCATAATTGTTATCAATAGCTAAAAATGTTTCGATGGTCACAATCTTCTTTTTAACTCATAAACagatatgtttgttttgtttgtttttcaaccCAACGCGTAATCAaactcttactttttttttttttatttagtggctattCGCATTAATTCGTAAGCTCTCATTCACAAATTTTACTACAATTTTctcattccccaatgacggttaggttaAGAGGTGGGGTTTTGGTTTtggccatgcctccttttaataATCGTAcattttttgtatgactgaactcgagGAATTTGTACAAATTACTCACTAAACTCACAAAATGTACAATAGTTACGtatcctcatgagatcaggctgatccAACACATAACGTCAATGGATAGTGCTTGGTAAGTGGCACAATACGTTGTTTGCCATTCTTTTACTGCTGTTTGTATAAATAGTGCTATAATACACGGCTGAGTTTTTAACGCCAACTAATTTTATGCCACACTGTTGTAacgtaattttattttaaaatctgcaATGTGTTAAATCCgacttaaaaatgtaattaagatCTTGATACAGCAATCACTAGGCCCACGATGCTAATATAAACTTGGGAAGCCTATTTAGAAAGTGGTACACAAGGTATTGTGTAAATTTGCAATGAAAATCTGACAATTTGTGGCTTATTGGTAAAtgttgatttattaattattgattttttttttactccactaTATTTTGTATCAAGATCATGGACAATgctgtgcttttatttatttatttatgatttttggaCTGTATATGTTTCTGTGTTTACAGAAATGCAAGATGATTGTGTAACAAATTACACTATGagaaatgtttaaatgtatagCTGTATGTCTCAAATTGTTTACATGCAGTGAATACTTGTTTTGTAACATATTGGTTTGGTTATATGATTTAACATGTAGTATACAACTTTTTTATCCGATGTAGTGATctcttgttttgtgttgtatttttttctaatacTGAGAGAATCTTTGCTTGTTTTTGCATAAAATCttgcataaaatgaaaatatcTGAATGTCTCAGCTTCTTTTCTGCAAACATTTAgagaaaatgttaaaaaagttttttgtttttgtttttttgaacatAGCTTAAATGGTACAAACTTATATTTCCGCctctttttacccagacatttaaatgtGCTgatgtatgtaagtttttgactcttcaaaagcataaaaataccataatttgTTTGCAGGagttatttaagaaacatgctaagtagtGCAGGTGGTGTACGGTCTGgctcaaaatggctgccgtcgtgtcatccaggtggataaatctgtggaaaaaaatgtgtaaagagaTCTGATTAccaagaaaagcgctatataaatgtaaagaacttattattaatgttgttatgacttgaaaatgaaagttctgtGTCGAAATCGGACGTGCTTATTAATAAAGCTGCTG

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0030099 myeloid cell differentiation biological_process
GO:0048731 system development biological_process
GO:0002244 hematopoietic progenitor cell differentiation biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0002520 immune system development biological_process
GO:0002262 myeloid cell homeostasis biological_process
GO:0000027 ribosomal large subunit assembly biological_process
GO:0000028 ribosomal small subunit assembly biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:1901532 regulation of hematopoietic progenitor cell differentiation biological_process
GO:0043009 chordate embryonic development biological_process
GO:0006364 rRNA processing biological_process
GO:0030154 cell differentiation biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1903706 regulation of hemopoiesis biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0048534 hematopoietic or lymphoid organ development biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0048856 anatomical structure development biological_process
GO:0002376 immune system process biological_process
GO:0010467 gene expression biological_process
GO:0048872 homeostasis of number of cells biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0034101 erythrocyte homeostasis biological_process
GO:0032501 multicellular organismal process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0032502 developmental process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0017134 fibroblast growth factor binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function
GO:0005007 fibroblast growth factor-activated receptor activity molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function
GO:0019199 transmembrane receptor protein kinase activity molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019113 lncRNA downstream 187588 2618279 ~ 2625928 (-) False XLOC_008933
TCONS_00017646 lncRNA downstream 202346 2598804 ~ 2611170 (-) True XLOC_008932
TCONS_00018809 lncRNA downstream 217395 2590381 ~ 2596121 (-) True XLOC_008931
TCONS_00017644 lncRNA downstream 293913 2517783 ~ 2519603 (-) True XLOC_008930
TCONS_00019112 lncRNA downstream 485232 2323666 ~ 2328284 (-) True XLOC_008928
TCONS_00017662 lncRNA upstream 102115 2918257 ~ 2931021 (-) True XLOC_008946
TCONS_00019115 lncRNA upstream 299195 3115337 ~ 3116262 (-) True XLOC_008951
TCONS_00019116 lncRNA upstream 344296 3160438 ~ 3162459 (-) True XLOC_008952
TCONS_00019117 lncRNA upstream 938424 3754566 ~ 3760957 (-) True XLOC_008957
TCONS_00019118 lncRNA upstream 1347436 4163578 ~ 4174873 (-) True XLOC_008970
TCONS_00017656 mRNA downstream 10203 2776506 ~ 2803313 (-) True XLOC_008941
TCONS_00017653 mRNA downstream 59460 2727670 ~ 2754056 (-) False XLOC_008939
TCONS_00017654 mRNA downstream 78956 2727941 ~ 2734560 (-) True XLOC_008939
TCONS_00017652 mRNA downstream 86854 2700646 ~ 2726662 (-) True XLOC_008938
TCONS_00017651 mRNA downstream 156008 2655566 ~ 2657508 (-) True XLOC_008937
TCONS_00017658 mRNA upstream 4626 2820768 ~ 2841677 (-) False XLOC_008943
TCONS_00017657 mRNA upstream 4626 2820768 ~ 2841677 (-) True XLOC_008943
TCONS_00017659 mRNA upstream 34823 2850965 ~ 2856362 (-) False XLOC_008944
TCONS_00017660 mRNA upstream 34823 2850965 ~ 2857961 (-) True XLOC_008944
TCONS_00017661 mRNA upstream 68569 2884711 ~ 2903475 (-) True XLOC_008945
TCONS_00017655 other downstream 77018 2736383 ~ 2736498 (-) True XLOC_008940
TCONS_00017647 other downstream 187853 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017639 other downstream 547433 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017627 other downstream 975633 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017597 other downstream 1491610 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017689 other upstream 1288266 4104408 ~ 4104526 (-) True XLOC_008968
TCONS_00017694 other upstream 1549016 4365158 ~ 4365272 (-) True XLOC_008973
TCONS_00017700 other upstream 1610352 4426494 ~ 4482147 (-) False XLOC_008974
TCONS_00017702 other upstream 1619323 4435465 ~ 4482230 (-) False XLOC_008974
TCONS_00017735 other upstream 2566920 5383062 ~ 5383180 (-) True XLOC_008997

Expression Profile

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