RNA id: TCONS_00001421


Basic Information

Item Value
RNA id TCONS_00001421
length 411
RNA type nonsense_mediated_decay
GC content 0.64
exon number 3
gene id XLOC_000903
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 39313 ~ 44565 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCGGTTTGCCACGTCGGTCTGTAACTGCGGCGCGAGGAACTTCAGCAACTTTGTGTTTTGCGTTCTGAGGCcgtaaacaacaaacaaacaaccgaGTAAACAAACAACGAGCTCCGGCGCAGACCCGCGGGCAGAGTGAGGAGCTCCGCCGCGCAGCAGATGCAGAGAGCGGCGTGTGGAGGAGCTGATGCCCGCTGATGCTGCTCCATGATCGtgtCCGCGGCGTGAGGTCGAGGGCTCCGAGATGCCCGGGGGCCGCAGGGGCCCCAGTAGACAGCAGCTGAGCCGCTCCGCGCTGCCGTCGCTGCAGACACTGGTGGGCGGCGGCCTGAGCAATGGGGCGGGGCTTCGATGCAGAACTTCCACCTGATGGACGCTCACCTGGCCGTGTTCATCGCAGTGATGCTGTC

Function

GO:

id name namespace
GO:0006914 autophagy biological_process
GO:1902902 negative regulation of autophagosome assembly biological_process
GO:1901097 negative regulation of autophagosome maturation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1928 Predicted to be involved in negative regulation of autophagosome assembly and negative regulation of autophagosome maturation. Predicted to act upstream of or within autophagy. Predicted to be located in endoplasmic reticulum. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human TMEM39A (transmembrane protein 39A).

Ensembl:

ensembl_id ENSDART00000165693

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001416 lncRNA downstream 30479 6642 ~ 11725 (-) True XLOC_000902
TCONS_00001415 lncRNA downstream 32285 6642 ~ 9919 (-) False XLOC_000902
TCONS_00001414 lncRNA downstream 34869 6642 ~ 7335 (-) False XLOC_000902
TCONS_00001427 lncRNA upstream 2874 47420 ~ 48077 (-) False XLOC_000904
TCONS_00003284 lncRNA upstream 2874 47420 ~ 49842 (-) False XLOC_000904
TCONS_00001428 lncRNA upstream 3274 47820 ~ 49695 (-) False XLOC_000904
TCONS_00001430 lncRNA upstream 4331 48877 ~ 49842 (-) True XLOC_000904
TCONS_00001433 lncRNA upstream 21159 65705 ~ 71494 (-) False XLOC_000906
TCONS_00001413 mRNA downstream 30177 6408 ~ 12027 (-) False XLOC_000902
TCONS_00001425 mRNA upstream 293 44839 ~ 50247 (-) False XLOC_000904
TCONS_00001426 mRNA upstream 1491 46037 ~ 48933 (-) False XLOC_000904
TCONS_00001431 mRNA upstream 16433 60979 ~ 64829 (-) False XLOC_000905
TCONS_00001432 mRNA upstream 16441 60987 ~ 65017 (-) True XLOC_000905
TCONS_00001435 mRNA upstream 21159 65705 ~ 71523 (-) False XLOC_000906
TCONS_00001429 other upstream 3408 47954 ~ 49835 (-) False XLOC_000904
TCONS_00001442 other upstream 108692 153238 ~ 153846 (-) False XLOC_000909
TCONS_00001460 other upstream 423197 467743 ~ 471925 (-) True XLOC_000917
TCONS_00001476 other upstream 576479 621025 ~ 625080 (-) False XLOC_000923
TCONS_00001485 other upstream 1006395 1050941 ~ 1051057 (-) True XLOC_000930

Expression Profile

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