RNA id: TCONS_00017663


Basic Information

Item Value
RNA id TCONS_00017663
length 2728
RNA type mRNA
GC content 0.48
exon number 6
gene id XLOC_008947
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 2931882 ~ 2973368 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTGAAGCTTTATAACCTGATCACTGTCTAGTCAGGGTGTTTTGTGACACAGCCCGTGTGTTTGCCGTGACTTAAAACTCTTCGGTTTGACATCGTTGAGGAGATGTGGACAGGTTTTACGGATTTTACTCAGCTTGGTTGCGCTGTCAGCTCCTCATAGTGTGTCTTACTCCGTCGTTTGCGTTTTCAGTTCACAAGTCTGCGTGTTTCTGACTTGAAGGAACATAAAGCGAGGTGAAGATCAGCGCGGAGAAACCCGTCTGGAGATGGAGgAGGAAGCTCCAGTCAAGACGTCGGTGGCCCAGTTGGCTGGAAAACTCAAAGCTCATGCGCTGCCAATGCCAGGAAACAAGGAGGTGAAGTCTATGAGGAGACCCCCATGTTCACTGGCCATTAATGACCAAAGAGATGAAGAACTTGAAGAGAAGTCGTCTGTTTGTCCTCATCCTGCCAAGATCAAGATGAAGAGTTCACCGCTCATAGAGAAACTACAGGCCAATCTCGCTCTGTCTCCAACCGTCCTGCTCTCTCCACCCAAAAGCCCAGAGTCCAAACAGCCGCCCTCTGCGTCCATCAGCCCGTGCAGTGTCGTGAGCTCCACCCTGCAGACCCCTCAGCTGTCCTGCGAAGATGAAGCGCCGGTCAGCTTCGAGCAGCCGGTGGAGGGCACACCACTGCCCAGCATCAACAAgAGTCGAGCCAGACTGTCGTTCAAGCGCCGGCTGCCCACACGCCTGCACAGGAAATCAGCAAGCGAAGAAGCCAAAGTGCAAGAGGACAACAATTCTCAACGCGAAACCGAAAACCCACAGCAGAATGGAGAAGATCTGATCTGTGGGCGTCTGCAGGAGGACAACGAAGAAAAAGCAAACACTGCTGACTCTGCTCGAACCAGCACAGAGGACAGACAAAAGCAAGAAGGCCAAGAAACAAATGCAGGAGACCAGGAGGAGTGTGAAGCTTCTGACTGTAAACCAGAACaagaaaaagaagagagagaagAGACGGAGGAGGACAGGACAGAAGTGAAAGAGGACACGGCGGAGAAAGAGACAGAGTAGATGAAATAGGTTGAAGGTCATCAAATGTGGAGCGCTTTTGGTTTTTTGCTTTAATATactcaacccgggctcattgtgggattgtagtcccgcggacgtttctggagactgcggaatacgtcccggcgggtacgtacggctgcagtttttgttttcgcgaatccacgagaggccgctgttgtgcgctttttcgcatctcagacgcctctcgcgagtgcggttcgcgcccgcgctgttctcgcgtgaacccaccagaggccgctgtccgactgaccggataaTTGACTACGCGACCGcccaatcggccgacccgccctcctccttctctgaacccaaccaattttaccgatcgacccgcctgcccgctcgcttccctaaacccgagcaacagtttacaaaagccgtccaaaaaaataaaagccctgattatttttttctaccgtgttttcagatttcaccgcgtcctcaccctgtcacgaaactcgttcacttcatttttgggattctgtttttgtcttacctgattgctgtaactgctcttccccggactcgaaaccggtcgccgtcgtcgactcctctctgcatctcgagcctgccgacgtacacggtgagctgagtggacaaacgggttgcagtggggaagccctccacaaggaggtaaggcaaccgtgaaagggaacagcgtcacaccgccccgcagcgttcgcttgaaaaaaataaacgcggccgtacgtacctcccgggacgtattccgctgtctccagaaacgtccgcgtgactacattttcagaatgagcttgggttgaatataCTCCAAGTGCTGCTTTAGACAGTAGTGATACTGACAGACTTCTGTTTAATTATCAGAGATAATAATTCACATTTAGGTGGACTTGCAGAGACCTGACAAAAATATCCGTAAATAAGCGgttttgcatattttgtgattcatgttttagtttttatttaaaaacaggcTCTTTGAAAGAGACAGAAtgtttgggtgctttcacacctgccttatttagttggattgaatcgcactagagttcgtttccccttttggtgcggttcgtttgggcaggtgtgaatgcagacGTCGTATTCTTgtgtgcaccaaaagcggaccaaaaaagcgtaccgagacctgcttgaagaggtggtctcggtacgctttcaaacgagaaaaatgagaaaatgagccgaactaaaacagacccaaacacaaaaagtactgcgccttttggactaatccagctgtcgtaggctgatgcgctgtgcattatgggatatggaggaaaaatatttgatgATAGCGCTTTaccaatagagagagagagagagagagagagagagggagagaggggaaaacattacctgatggatcattggtaatatttccgcaagttgaccatgtcgcagtttagctaaattaattcacgcctcctcctgaagtgacgtgagatgcattaaaacattgttttccagccgcggccatGCTTCAttctcgtaatgtatagtttgccTAAAGCAGGGATACTGCtttagaaaagaaaatgaatgaataaatgatgaactaacaatatatgtatatgtatgtatgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatata

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060825-136 Predicted to be involved in DNA replication-independent nucleosome assembly. Predicted to be active in nucleus. Orthologous to human RCSD1 (RCSD domain containing 1).

Ensembl:

ensembl_id ENSDART00000163131

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00017662 lncRNA downstream 861 2918257 ~ 2931021 (-) True XLOC_008946
TCONS_00019114 lncRNA downstream 115740 2813516 ~ 2816142 (-) True XLOC_008942
TCONS_00019113 lncRNA downstream 305954 2618279 ~ 2625928 (-) False XLOC_008933
TCONS_00017646 lncRNA downstream 320712 2598804 ~ 2611170 (-) True XLOC_008932
TCONS_00018809 lncRNA downstream 335761 2590381 ~ 2596121 (-) True XLOC_008931
TCONS_00019115 lncRNA upstream 141969 3115337 ~ 3116262 (-) True XLOC_008951
TCONS_00019116 lncRNA upstream 187070 3160438 ~ 3162459 (-) True XLOC_008952
TCONS_00019117 lncRNA upstream 781198 3754566 ~ 3760957 (-) True XLOC_008957
TCONS_00019118 lncRNA upstream 1190210 4163578 ~ 4174873 (-) True XLOC_008970
TCONS_00017697 lncRNA upstream 1449113 4422481 ~ 4436431 (-) False XLOC_008974
TCONS_00017661 mRNA downstream 28407 2884711 ~ 2903475 (-) True XLOC_008945
TCONS_00017660 mRNA downstream 73921 2850965 ~ 2857961 (-) True XLOC_008944
TCONS_00017659 mRNA downstream 75520 2850965 ~ 2856362 (-) False XLOC_008944
TCONS_00017658 mRNA downstream 90205 2820768 ~ 2841677 (-) False XLOC_008943
TCONS_00017657 mRNA downstream 90205 2820768 ~ 2841677 (-) True XLOC_008943
TCONS_00017665 mRNA upstream 2752 2976120 ~ 2985599 (-) True XLOC_008948
TCONS_00017666 mRNA upstream 14225 2987593 ~ 3078600 (-) True XLOC_008949
TCONS_00017667 mRNA upstream 115844 3089212 ~ 3094516 (-) False XLOC_008950
TCONS_00017668 mRNA upstream 115844 3089212 ~ 3096150 (-) True XLOC_008950
TCONS_00017669 mRNA upstream 272955 3246323 ~ 3252727 (-) True XLOC_008953
TCONS_00017655 other downstream 195384 2736383 ~ 2736498 (-) True XLOC_008940
TCONS_00017647 other downstream 306219 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017639 other downstream 665799 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017627 other downstream 1093999 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017597 other downstream 1609976 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017689 other upstream 1131040 4104408 ~ 4104526 (-) True XLOC_008968
TCONS_00017694 other upstream 1391790 4365158 ~ 4365272 (-) True XLOC_008973
TCONS_00017700 other upstream 1453126 4426494 ~ 4482147 (-) False XLOC_008974
TCONS_00017702 other upstream 1462097 4435465 ~ 4482230 (-) False XLOC_008974
TCONS_00017735 other upstream 2409694 5383062 ~ 5383180 (-) True XLOC_008997

Expression Profile

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