RNA id: TCONS_00017664


Basic Information

Item Value
RNA id TCONS_00017664
length 832
RNA type mRNA
GC content 0.52
exon number 5
gene id XLOC_008947
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 2931882 ~ 2973368 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAAAATCATTTGGTTGAGACtgagtttgtgtttgtttcaggAGGAAGCTCCAGTCAAGACGTCGGTGGCCCAGTTGGCTGGAAAACTCAAAGCTCATGCGCTGCCAATGCCAGGAAACAAGGAGGTGAAGTCTATGAGGAGACCCCCATGTTCACTGGCCATTAATGACCAAAGAGATGAAGAACTTGAAGAGAAGTCGTCTGTTTGTCCTCATCCTGCCAAGATCAAGATGAAGAGTTCACCGCTCATAGAGAAACTACAGGCCAATCTCGCTCTGTCTCCAACCGTCCTGCTCTCTCCACCCAAAAGCCCAGAGTCCAAACAGCCGCCCTCTGCGTCCATCAGCCCGTGCAGTGTCGTGAGCTCCACCCTGCAGACCCCTCAGCTGTCCTGCGAAGATGAAGCGCCGGTCAGCTTCGAGCAGCCGGTGGAGGGCACACCACTGCCCAGCATCAACAAgAGTCGAGCCAGACTGTCGTTCAAGCGCCGGCTGCCCACACGCCTGCACAGGAAATCAGCAAGCGAAGAAGCCAAAGTGCAAGAGGACAACAATTCTCAACGCGAAACCGAAAACCCACAGCAGAATGGAGAAGATCTGATCTGTGGGCGTCTGCAGGAGGACAACGAAGAAAAAGCAAACACTGCTGACTCTGCTCGAACCAGCACAGAGGACAGACAAAAGCAAGAAGGCCAAGAAACAAATGCAGGAGACCAGGAGGAGTGTGAAGCTTCTGACTGTAAACCAGAACaagaaaaagaagagagagaagAGACGGAGGAGGACAGGACAGAAGTGAAAGAGGACACGGCGGAGAAAGAGACAGAGTAGAT

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060825-136 Predicted to be involved in DNA replication-independent nucleosome assembly. Predicted to be active in nucleus. Orthologous to human RCSD1 (RCSD domain containing 1).

Ensembl:

ensembl_id ENSDART00000161053

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00017662 lncRNA downstream 2526 2918257 ~ 2931021 (-) True XLOC_008946
TCONS_00019114 lncRNA downstream 117405 2813516 ~ 2816142 (-) True XLOC_008942
TCONS_00019113 lncRNA downstream 307619 2618279 ~ 2625928 (-) False XLOC_008933
TCONS_00017646 lncRNA downstream 322377 2598804 ~ 2611170 (-) True XLOC_008932
TCONS_00018809 lncRNA downstream 337426 2590381 ~ 2596121 (-) True XLOC_008931
TCONS_00019115 lncRNA upstream 160894 3115337 ~ 3116262 (-) True XLOC_008951
TCONS_00019116 lncRNA upstream 205995 3160438 ~ 3162459 (-) True XLOC_008952
TCONS_00019117 lncRNA upstream 800123 3754566 ~ 3760957 (-) True XLOC_008957
TCONS_00019118 lncRNA upstream 1209135 4163578 ~ 4174873 (-) True XLOC_008970
TCONS_00017697 lncRNA upstream 1468038 4422481 ~ 4436431 (-) False XLOC_008974
TCONS_00017661 mRNA downstream 30072 2884711 ~ 2903475 (-) True XLOC_008945
TCONS_00017660 mRNA downstream 75586 2850965 ~ 2857961 (-) True XLOC_008944
TCONS_00017659 mRNA downstream 77185 2850965 ~ 2856362 (-) False XLOC_008944
TCONS_00017658 mRNA downstream 91870 2820768 ~ 2841677 (-) False XLOC_008943
TCONS_00017665 mRNA upstream 21677 2976120 ~ 2985599 (-) True XLOC_008948
TCONS_00017666 mRNA upstream 33150 2987593 ~ 3078600 (-) True XLOC_008949
TCONS_00017667 mRNA upstream 134769 3089212 ~ 3094516 (-) False XLOC_008950
TCONS_00017668 mRNA upstream 134769 3089212 ~ 3096150 (-) True XLOC_008950
TCONS_00017669 mRNA upstream 291880 3246323 ~ 3252727 (-) True XLOC_008953
TCONS_00017655 other downstream 197049 2736383 ~ 2736498 (-) True XLOC_008940
TCONS_00017647 other downstream 307884 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017639 other downstream 667464 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017627 other downstream 1095664 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017597 other downstream 1611641 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017689 other upstream 1149965 4104408 ~ 4104526 (-) True XLOC_008968
TCONS_00017694 other upstream 1410715 4365158 ~ 4365272 (-) True XLOC_008973
TCONS_00017700 other upstream 1472051 4426494 ~ 4482147 (-) False XLOC_008974
TCONS_00017702 other upstream 1481022 4435465 ~ 4482230 (-) False XLOC_008974
TCONS_00017735 other upstream 2428619 5383062 ~ 5383180 (-) True XLOC_008997

Expression Profile

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