RNA id: TCONS_00017668


Basic Information

Item Value
RNA id TCONS_00017668
length 2640
RNA type mRNA
GC content 0.48
exon number 2
gene id XLOC_008950
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 3089212 ~ 3096150 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cattactgctgctCTGGGCCATTCCTGCACAAGAAAATGCATATCTGGATTCTGAAAATAATATTGCTGGTTGCCACATCTCTGAGTCTGGTTGAGCTGTATGACAATTATGGGGAGATCTGTAGGAATCTGTGCACTTGCGAGGAGAAGGAGGGCATTCTGACTGTCAGTTGTGAGAACAGGGGCATTGTGCGACTGTCGGAAATAAGCCCGGTGCATTTTTCTATGTACCATCTTTTGCTGACAGGCAATTTGCTGAAAAAATTGTCTGTCAACGACTTCATCAACTACACTGGAGTTACTATTTTGCATTTAGGTAATAATGACATTTCGGAGGTGGAGACCGGGTCTTTCAATGGCCTCCAGGGATTAAAGAGATTACATTTGAACAATAACAAAATAGACATTCTGAGGGACGACACTTTCGTCGGACTGGAAAGCCTAGAGTACCTGCAGATTGACTATAATTTTATTAGCACTATTGAACCTAATGCTCTGAACAGGCTTCATCAACTGACTGTGCTGATTCTCAATGACAACTTGTTGTCCGCTCTGCCCACAAACATTTTCCGGAATGTGCCCTTAACGCACCTGGATCTAAGAGGCAATCGCTTAAAAAGTTTCCCTTACATCGGCCTTTTGGAGCATATGGACAAAGTGGTGGAATTACAGCTGGAGGAAAATCCGTGGAACTGTTCTTGCGAGCTGATCGCGCTGAAGGCTTGGCTGGAGAGCATCGCCTACACTGCTCTAGTGGGGGAGGTGGTTTGTGAGACTCCATTCAGACTCCATGGCAGGGATCTGGACGAGATCTCAAAGCAGGAACTGTGTCCCAGAAGGGCCATTTCAGAGTATGAGATGCGTCCACCTCCCCCGCTCAGCACCAGCGGCTACTTCCAGACCACACCGGCAGCTGTTACGGCGTCAGCCACGTCTTCAGCCGTGCTGAGATCCTCATCGAGGCCCACCAAGGGTCCCCGCCAGTCTAGCAAAACCAAGTCCAAGCCCACATCTCGAATCCCAGCCAACCCCTACAACTACGGACCCATCATTGGTTTTCAGACCAAATCCCCCGTGCCTTTGGACTGCCCCACCACCTGTACATGCAATCTGCAAATCTCCGATCTGGGGCTAAATGTGAACTGCCAGGAAAGGAAGATCGAAAACATATCAGATCTAAAGCCCAAGCCATACAATCCTAAAAAGATGTACCTCACTGGAAACTACATCCCTGTGGTACGCAGATCTGATTTTGTGGAGGCCGAGGGATTGGATTTATTGCACCTGGGAAACAATCGGATAGCAGTCATACACGACAGAGCCTTTGGGGATTTAATTAACCTACGTAGGCTGTACTTGAATGGCAATTTGATTGACAGGCTCACCTCAGATATGTTCTTTGGGCTAAAGAGTCTGCAGTACTTGTATTTAGAATATAATAAGATTCGGGAGATTGTAGGCGGCACTTTTCGCTATGTGCCCAATCTCCAGCTACTGTTCCTCAATAACAATCTTTTAAAAACGTTACCCGGAGGGATTTTCTCCAGTCTGTCTCTGTCCCGCCTCAATCTCCGCAGCAACCACTTTCAAAACCTGCCTGTGAGTGGAGTTCTGGACCAGCTGAAAGCTCTGGTTCAGATTGACCTGTTCGAGAACCCTTGGGATTGCACCTGTGACGTGGTTGGCATGAAGATCTGGTTGGAGCAGCTGAATTCTGGAACGGTGGTCAATGATGTTAAATGCGTGACACCTAAGCGGCTTGCGGGACAGGATATGCGGGTCATCCCCTCTGAGCAATTATGTCCAGACTACTCTGATGTCATCGTGTCCACCGTAGTTCCTTCCGAGGAGCCTTCGGCAGACAGGATCACTACCACAGAGACGCCCCAAAGgtttaacaccacttccagcaatGTTCCTTTGTCTGTTCTCATTCTGAGCCTCCTTCTGGTTTTCATAATGTCCGTGTTTGTGGCAGCCGGCTTGTTTGTGGTGGTAATGAAGAGGCGCAAGAAGTCTCAGAGTGACCGTACCAGCACAAACAACTCAGACGTGAGCTCTTTCAACCTGCAGTACAATCTCTATAGCAATCGTTCCATCCCCAAAGTCAAGCCCGCAGCGGGGCTCGTCTATGAGTACATTCCCCATACATTAGGCCACATGTGCAAAAACCCAATCTACAGGTCCCGCGAAGGGAACGCTGTAGATGATTACTCGAATATGCACGAGCTCAAGGTCACCTACAGTAGCAATGTAGATGAGGACCAGGAGGTCTCCTTGAGGAACCAAAAGTACACAGTGAACGTCATCGAACCTCGTGAGCAACCTTCTCCTGTTCAGGACACGGAACACTTCTTCAGAGGGGTCTTGGAGCCGGATAAGTCTCCAGCGACTGCTGGTGGCAGATTTGAATATAAGTACTCTGGCCCCGTCCCATACACATACCAACCAAACTTCGACGTCAGGCGCCAGTTCTCACATCCCGAAGGATTACGAGAGACTATGCTTTATGGTACGATGCCAAGTACTGTCTTTGTGGAGCCCAATAGAAATGACTATTTGGAATTAAAGGCAAAACTTCAAATAGAGCCGGACTACCTCGAAGTTCTTGAGAAACAGACAACACAGAGCCAGTTTTAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000165682

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00017662 lncRNA downstream 158191 2918257 ~ 2931021 (-) True XLOC_008946
TCONS_00019114 lncRNA downstream 273070 2813516 ~ 2816142 (-) True XLOC_008942
TCONS_00019113 lncRNA downstream 463284 2618279 ~ 2625928 (-) False XLOC_008933
TCONS_00017646 lncRNA downstream 478042 2598804 ~ 2611170 (-) True XLOC_008932
TCONS_00018809 lncRNA downstream 493091 2590381 ~ 2596121 (-) True XLOC_008931
TCONS_00019115 lncRNA upstream 19187 3115337 ~ 3116262 (-) True XLOC_008951
TCONS_00019116 lncRNA upstream 64288 3160438 ~ 3162459 (-) True XLOC_008952
TCONS_00019117 lncRNA upstream 658416 3754566 ~ 3760957 (-) True XLOC_008957
TCONS_00019118 lncRNA upstream 1067428 4163578 ~ 4174873 (-) True XLOC_008970
TCONS_00017697 lncRNA upstream 1326331 4422481 ~ 4436431 (-) False XLOC_008974
TCONS_00017666 mRNA downstream 10612 2987593 ~ 3078600 (-) True XLOC_008949
TCONS_00017665 mRNA downstream 103613 2976120 ~ 2985599 (-) True XLOC_008948
TCONS_00017663 mRNA downstream 115844 2931882 ~ 2973368 (-) False XLOC_008947
TCONS_00017664 mRNA downstream 134769 2933547 ~ 2954443 (-) True XLOC_008947
TCONS_00017661 mRNA downstream 185737 2884711 ~ 2903475 (-) True XLOC_008945
TCONS_00017669 mRNA upstream 150173 3246323 ~ 3252727 (-) True XLOC_008953
TCONS_00017670 mRNA upstream 158904 3255054 ~ 3282220 (-) False XLOC_008954
TCONS_00017671 mRNA upstream 159414 3255564 ~ 3277635 (-) True XLOC_008954
TCONS_00017672 mRNA upstream 358379 3454529 ~ 3534705 (-) False XLOC_008955
TCONS_00017673 mRNA upstream 359689 3455839 ~ 3466015 (-) True XLOC_008955
TCONS_00017655 other downstream 352714 2736383 ~ 2736498 (-) True XLOC_008940
TCONS_00017647 other downstream 463549 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017639 other downstream 823129 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017627 other downstream 1251329 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017597 other downstream 1767306 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017689 other upstream 1008258 4104408 ~ 4104526 (-) True XLOC_008968
TCONS_00017694 other upstream 1269008 4365158 ~ 4365272 (-) True XLOC_008973
TCONS_00017700 other upstream 1330344 4426494 ~ 4482147 (-) False XLOC_008974
TCONS_00017702 other upstream 1339315 4435465 ~ 4482230 (-) False XLOC_008974
TCONS_00017735 other upstream 2286912 5383062 ~ 5383180 (-) True XLOC_008997

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000299_01693958_01696561.mRNA True 4382 mRNA 0.43 1 CI01000299 1692924 ~ 1697305 (-)