RNA id: TCONS_00019115


Basic Information

Item Value
RNA id TCONS_00019115
length 926
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id XLOC_008951
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 3115337 ~ 3116262 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTACCAACAATGAGGAGTTTGGATACGGTCCCCACAAACAACTGCTCCATCAGCCAGTTCAAGCACACCGTCTACCCCATCGCCTACCTGTTCATCTTCTTCCTCGGGCTGGTCGGCAACATCACCTCGCTCGTCTTCTTCGTTGCTTCTTCAGTCCGAAAAAAGGTGTCTTTAACTCCGGTGAACATCCTCATGCTCAATCTCCTGCTGTCGGATCTGATGCTGGTGTGCTCGCTGCCTTTCCGGGCCTCCTACTTCCTCATGGACTCCAATTGGGTTTTTGGAGATGTAACCTGCCGGATCATGTCTTACGTCTTCTACATTAATATGTACGGAAGTGTCTACTTTCTGACCGTACTTAGTATGGTTCGGTTCGTGGCCATTGTCAAGCCGTTCGCGTATGTACGCTGGCAAAACCCACGACGGGCCTGGATCATCTGCGTTGTTATTTGGATGATCGTTTCTCTGGCCTCCATCCCGCTTCTGAAAGCAGGAACGCATGAGGAGAATGAAAAAACCAGATGTCTGGATTTGGGACACTCCAATTTGGAAACTATTATCATTTTAAACCGTGGTGTGCTGTTTTTGGGATTTGTCGTGCCTTTCGCGATCATCTCTGTGTGTTATATCTTTGCGGCTGTGTATTTGATAAAGCTCAAGAAGAGGAACCAAAGATCTCAGTTCAACCAGAAAAAGTCCTGCTCTCTCGTCATCATAGTTTTACTGATTTTCCTGGCCTGCTTCATGCCTTATCATGTCGTCCGAACTCTATTTTTGGAGGCTGAGAGGGATATTAAAATCAACGGTTATGGCGATTCTTGCCTTTACATCGAAACTTTAAGAAAAGCGGCAGTCGTCACACACGTTCTGGCGTCTGGAAACAGTGTCTGGATCCGCTGCTGTTCATTTTTGTTGGGGAAAACTTC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00017662 lncRNA downstream 184316 2918257 ~ 2931021 (-) True XLOC_008946
TCONS_00019114 lncRNA downstream 299195 2813516 ~ 2816142 (-) True XLOC_008942
TCONS_00019113 lncRNA downstream 489409 2618279 ~ 2625928 (-) False XLOC_008933
TCONS_00017646 lncRNA downstream 504167 2598804 ~ 2611170 (-) True XLOC_008932
TCONS_00018809 lncRNA downstream 519216 2590381 ~ 2596121 (-) True XLOC_008931
TCONS_00019116 lncRNA upstream 44176 3160438 ~ 3162459 (-) True XLOC_008952
TCONS_00019117 lncRNA upstream 638304 3754566 ~ 3760957 (-) True XLOC_008957
TCONS_00019118 lncRNA upstream 1047316 4163578 ~ 4174873 (-) True XLOC_008970
TCONS_00017697 lncRNA upstream 1306219 4422481 ~ 4436431 (-) False XLOC_008974
TCONS_00017701 lncRNA upstream 1312756 4429018 ~ 4445598 (-) False XLOC_008974
TCONS_00017668 mRNA downstream 19187 3089212 ~ 3096150 (-) True XLOC_008950
TCONS_00017667 mRNA downstream 20821 3089212 ~ 3094516 (-) False XLOC_008950
TCONS_00017666 mRNA downstream 36737 2987593 ~ 3078600 (-) True XLOC_008949
TCONS_00017665 mRNA downstream 129738 2976120 ~ 2985599 (-) True XLOC_008948
TCONS_00017663 mRNA downstream 141969 2931882 ~ 2973368 (-) False XLOC_008947
TCONS_00017669 mRNA upstream 130061 3246323 ~ 3252727 (-) True XLOC_008953
TCONS_00017670 mRNA upstream 138792 3255054 ~ 3282220 (-) False XLOC_008954
TCONS_00017671 mRNA upstream 139302 3255564 ~ 3277635 (-) True XLOC_008954
TCONS_00017672 mRNA upstream 338267 3454529 ~ 3534705 (-) False XLOC_008955
TCONS_00017673 mRNA upstream 339577 3455839 ~ 3466015 (-) True XLOC_008955
TCONS_00017655 other downstream 378839 2736383 ~ 2736498 (-) True XLOC_008940
TCONS_00017647 other downstream 489674 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017639 other downstream 849254 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017627 other downstream 1277454 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017597 other downstream 1793431 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017689 other upstream 988146 4104408 ~ 4104526 (-) True XLOC_008968
TCONS_00017694 other upstream 1248896 4365158 ~ 4365272 (-) True XLOC_008973
TCONS_00017700 other upstream 1310232 4426494 ~ 4482147 (-) False XLOC_008974
TCONS_00017702 other upstream 1319203 4435465 ~ 4482230 (-) False XLOC_008974
TCONS_00017735 other upstream 2266800 5383062 ~ 5383180 (-) True XLOC_008997

Expression Profile

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