RNA id: TCONS_00019116


Basic Information

Item Value
RNA id TCONS_00019116
length 1758
lncRNA type antisense_over
GC content 0.31
exon number 2
gene id XLOC_008952
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 3160438 ~ 3162459 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

agccattttttccccatttttttcacaaaaaaaatgaaaaatttgtttgaatttaaacagttttcagttatttaaaaagtattttacaaaTAGTATGAATGATTTATATACATATAGTATTGAATAGAATTCAAATGTATTACATCTGTCACATTATTGTTGCAATGTATTGGCCCTCTCTGCCATTTTTCGATTATGCCAACACCTCTTCAGTGGGCTCATGGGATTtaagtaaatttatatataattttattaatttatttatttattttttcattcaaacTCATACCTAACAAATCTACTAAATCCACAGTAAATccagaaaaaaactgttttaagaggtctcttaatatttacatttatatttaaatatatgtacaaATTTATTTGTAGATTTTGAGGTGAAATACGGTTCTGCCATTATTTTCTCCACAGCTTTTGCACGATTCGCTTATTAGTGCTTGTAAAAATACGACTGGACGAAAGCAGTGACCTTTCTGACATGCTCAAAATAACACTGATACACAAAAAGACAgcaaacatgacaaaaaaaacacataatagtCAATAAAAAATGACATTACTCTGATCTGTAAATTAATCTAGTGCCAAAGTCACTATAGTACATTTCAAAACAATGCTAGAACACTCTAAATGTGACGTATTGCTACATCAAAGCTCCTGCTAAggtctgaagaaaaaaaaatgaatcatgaTCTCCAATGACACAGGATCATCTTTGTTTGGTTGTTGGCCAGATTTATAAAGGCCATTGTGACAATAGGAGACCAATTTAGGATGGATAACCTGTCGAATAAtctcttaaaggaacagttcccCCAAAACAAAATTAACTCATTATTTATTCTCTCTCAAGTGGTTCAAATTTTTAGAAATATCATCCATAGttgggaaaacaaatactataaaagtcaatgttaACTGAATGGTTCTGAAGAAGATGacggaattttcagttttgggtgtaCGGTCCCTTTAAATTTAAACTTCAGGCTGTAAATCTATTAGGAAAACAAATGAAGAAGTCTTTCTCGATCAACCATCTCATATACACAAAACGGTTCTTCCCTTTTGCTTTTTCATATTTCAATCccttcctttttttgtttgttcagtgATTTCAATcattacaaacaaataaaaagttgagtcaacttgaAATTCTATGGCTGCACAGCTTTGAGTTAACTGCAGATGACACAATTTAAGTGTAGTctactccaaaaaaaaaactgtgcagcCTTACAATTTGAAGTTAAcgcaacttaaaattttaaggctgcgcagctttttttttttttttttttttttttttttgagttgactcaattTTTAAGCCAAGTAAACCATATGACATAATTTAAGAGGAGTCagctaaaaaaaaactgcagcctTATAATTTTAGGTCcagtcaacttaaaattgtaaggctgTGCAGATTTTTTGAGTTAACTCGACTTTTAATCCTTTTACTGCAGATGATACGATTTAAGTGGAGTCAACTCAAAAAACTGTGcggccttacaattttaagttaactcgacttaaaattgtaaaaccgCACagtttttgagttgactcaaattTTAACCCAAGTACAGCAGATGACATGacttaagttgagtcaactcaaaaaaactGTGCAGCCTTACAATATTAAGTCAAGTCAACTTAAAGTTGTAAGgctgcacagtttgtttgttttttgagttGACTCCACTTTTAACCCAAGTACAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019115 lncRNA downstream 44176 3115337 ~ 3116262 (-) True XLOC_008951
TCONS_00017662 lncRNA downstream 229417 2918257 ~ 2931021 (-) True XLOC_008946
TCONS_00019114 lncRNA downstream 344296 2813516 ~ 2816142 (-) True XLOC_008942
TCONS_00019113 lncRNA downstream 534510 2618279 ~ 2625928 (-) False XLOC_008933
TCONS_00017646 lncRNA downstream 549268 2598804 ~ 2611170 (-) True XLOC_008932
TCONS_00019117 lncRNA upstream 592107 3754566 ~ 3760957 (-) True XLOC_008957
TCONS_00019118 lncRNA upstream 1001119 4163578 ~ 4174873 (-) True XLOC_008970
TCONS_00017697 lncRNA upstream 1260022 4422481 ~ 4436431 (-) False XLOC_008974
TCONS_00017701 lncRNA upstream 1266559 4429018 ~ 4445598 (-) False XLOC_008974
TCONS_00017703 lncRNA upstream 1282601 4445060 ~ 4485867 (-) True XLOC_008974
TCONS_00017668 mRNA downstream 64288 3089212 ~ 3096150 (-) True XLOC_008950
TCONS_00017667 mRNA downstream 65922 3089212 ~ 3094516 (-) False XLOC_008950
TCONS_00017666 mRNA downstream 81838 2987593 ~ 3078600 (-) True XLOC_008949
TCONS_00017665 mRNA downstream 174839 2976120 ~ 2985599 (-) True XLOC_008948
TCONS_00017664 mRNA downstream 205995 2933547 ~ 2954443 (-) True XLOC_008947
TCONS_00017669 mRNA upstream 83864 3246323 ~ 3252727 (-) True XLOC_008953
TCONS_00017670 mRNA upstream 92595 3255054 ~ 3282220 (-) False XLOC_008954
TCONS_00017671 mRNA upstream 93105 3255564 ~ 3277635 (-) True XLOC_008954
TCONS_00017672 mRNA upstream 292070 3454529 ~ 3534705 (-) False XLOC_008955
TCONS_00017673 mRNA upstream 293380 3455839 ~ 3466015 (-) True XLOC_008955
TCONS_00017655 other downstream 423940 2736383 ~ 2736498 (-) True XLOC_008940
TCONS_00017647 other downstream 534775 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017639 other downstream 894355 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017627 other downstream 1322555 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017597 other downstream 1838532 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017689 other upstream 941949 4104408 ~ 4104526 (-) True XLOC_008968
TCONS_00017694 other upstream 1202699 4365158 ~ 4365272 (-) True XLOC_008973
TCONS_00017700 other upstream 1264035 4426494 ~ 4482147 (-) False XLOC_008974
TCONS_00017702 other upstream 1273006 4435465 ~ 4482230 (-) False XLOC_008974
TCONS_00017735 other upstream 2220603 5383062 ~ 5383180 (-) True XLOC_008997