RNA id: TCONS_00017671


Basic Information

Item Value
RNA id TCONS_00017671
length 922
RNA type mRNA
GC content 0.53
exon number 6
gene id XLOC_008954
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 3255054 ~ 3282220 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAGCATGGCTCCACATCCTGTCACCCAGGCCGTCATTGACCTGTCAGCTGGAGCATGTGGTGGGACTGCATGTGTGATCAGCGGACAGCCGTTCGACACGGCCAAGGTGAAGATGCAGACGTTCCCCGGCCTGTACAGAGGCTTCGTCCACTGCTTCGTCTCGGTGTACAAACAGGTTGGCCTGCGTGGGCTTTATCAGGGCACCACACCCGCCCTCATAGCCAACATCGCGGAGAACGCAGTGCTCTTCATGAGCTACGGCTTCTGCCAGAATGTGGTGCGCTTTCTTTCAGGACTGGACCGAAACACTGAACTCAGTGATGTCCAGAAGGCCTGCTCCGGCTCTGTGGCCTCTGTCTTCTCCTCTCTGGCTTTGTGTCCCACTGAACTGGTCAAATGTCGACTGCAGGCCATGCATGAAATGGAGGCATCCGGCAAGATCGCCAGCGGACAAAAAAGCACGGTGTGGTCTGTTGTGAGAAATGTGTTGCGGACAAACGGTCCTTTGGGTTTCTATCAGGGCTTCACCACCACTATTGTCCGAGAGCTGCCTGGATATTTCTGTTTCTTTGGAGGTTATGAACTCAGCCGCTCCATATTTGCCCACCACATGGCCACAGACAAAGAGCACATCGGTGTCGTGCCGCTGATGTTCAGTGGGGGTTTTGGCGGTGCGTGTCTCTGGTTGGTTGTGTATCCTATAGACTGTGTGAAATCTCGCATTCAGGTTCTGTCTCTAGCAGGGAAACAGGAAGGTTTCATCAAGACTCTTATGGGGATTTTACGAAACGAAGGAGTGGCGCCTCTGTATTCAGGTTTGACTCCTACTATGATCCGCACGTTTCCTGCTAATGGAGCTCTCTTTCTGGCTTATGAAGTCAGTCGCAAGTTCATGATGAAGCAGTTTGATCATTGAGTCCA

Function

GO:

id name namespace
GO:1990575 mitochondrial L-ornithine transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0000064 L-ornithine transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070112-1072 Predicted to enable L-ornithine transmembrane transporter activity. Predicted to be involved in mitochondrial L-ornithine transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in amino acid metabolic disorder; citrullinemia; and ornithine translocase deficiency. Orthologous to human SLC25A15 (solute carrier family 25 member 15).

Ensembl:

ensembl_id ENSDART00000189094

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019116 lncRNA downstream 93105 3160438 ~ 3162459 (-) True XLOC_008952
TCONS_00019115 lncRNA downstream 139302 3115337 ~ 3116262 (-) True XLOC_008951
TCONS_00017662 lncRNA downstream 324543 2918257 ~ 2931021 (-) True XLOC_008946
TCONS_00019114 lncRNA downstream 439422 2813516 ~ 2816142 (-) True XLOC_008942
TCONS_00019113 lncRNA downstream 629636 2618279 ~ 2625928 (-) False XLOC_008933
TCONS_00019117 lncRNA upstream 476931 3754566 ~ 3760957 (-) True XLOC_008957
TCONS_00019118 lncRNA upstream 885943 4163578 ~ 4174873 (-) True XLOC_008970
TCONS_00017697 lncRNA upstream 1144846 4422481 ~ 4436431 (-) False XLOC_008974
TCONS_00017701 lncRNA upstream 1151383 4429018 ~ 4445598 (-) False XLOC_008974
TCONS_00017703 lncRNA upstream 1167425 4445060 ~ 4485867 (-) True XLOC_008974
TCONS_00017669 mRNA downstream 2837 3246323 ~ 3252727 (-) True XLOC_008953
TCONS_00017668 mRNA downstream 159414 3089212 ~ 3096150 (-) True XLOC_008950
TCONS_00017667 mRNA downstream 161048 3089212 ~ 3094516 (-) False XLOC_008950
TCONS_00017666 mRNA downstream 176964 2987593 ~ 3078600 (-) True XLOC_008949
TCONS_00017665 mRNA downstream 269965 2976120 ~ 2985599 (-) True XLOC_008948
TCONS_00017672 mRNA upstream 176894 3454529 ~ 3534705 (-) False XLOC_008955
TCONS_00017673 mRNA upstream 178204 3455839 ~ 3466015 (-) True XLOC_008955
TCONS_00017674 mRNA upstream 378577 3656212 ~ 3736773 (-) False XLOC_008956
TCONS_00017675 mRNA upstream 457433 3735068 ~ 3736149 (-) True XLOC_008956
TCONS_00017676 mRNA upstream 648460 3926095 ~ 3940671 (-) True XLOC_008958
TCONS_00017655 other downstream 519066 2736383 ~ 2736498 (-) True XLOC_008940
TCONS_00017647 other downstream 629901 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017639 other downstream 989481 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017627 other downstream 1417681 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017597 other downstream 1933658 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017689 other upstream 826773 4104408 ~ 4104526 (-) True XLOC_008968
TCONS_00017694 other upstream 1087523 4365158 ~ 4365272 (-) True XLOC_008973
TCONS_00017700 other upstream 1148859 4426494 ~ 4482147 (-) False XLOC_008974
TCONS_00017702 other upstream 1157830 4435465 ~ 4482230 (-) False XLOC_008974
TCONS_00017735 other upstream 2105427 5383062 ~ 5383180 (-) True XLOC_008997

Expression Profile

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