RNA id: TCONS_00019117


Basic Information

Item Value
RNA id TCONS_00019117
length 335
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id XLOC_008957
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 3754566 ~ 3760957 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCAAACAAACAGAAACGCTGCTGTTGAGGTCGAAGGCTTACAATAACAAAACACTCTTGCTCAATATCGAGGCCTTCTCTTCTGTCTCTGGCTCAGAGAACGAGTCAAACACAGCTGTCAAGTTCCTGCTTGCTAGAATGAGCTTccggtgagaaaaaaaaaagcaaaagcatgCCTCAACATCTCCAAGACTTTCTGGAAACCACAAGACGCAGGTTTGACAAAAAAATCAGACTTGCGCAACAACAAGAGATACACGAGGTTCAACTCAACAGTCAGGAGATAAACCAAATCTAGCAGGTTTATTTGatgaaataaACTCacacaagtttgg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019116 lncRNA downstream 592107 3160438 ~ 3162459 (-) True XLOC_008952
TCONS_00019115 lncRNA downstream 638304 3115337 ~ 3116262 (-) True XLOC_008951
TCONS_00017662 lncRNA downstream 823545 2918257 ~ 2931021 (-) True XLOC_008946
TCONS_00019114 lncRNA downstream 938424 2813516 ~ 2816142 (-) True XLOC_008942
TCONS_00019113 lncRNA downstream 1128638 2618279 ~ 2625928 (-) False XLOC_008933
TCONS_00019118 lncRNA upstream 402621 4163578 ~ 4174873 (-) True XLOC_008970
TCONS_00017697 lncRNA upstream 661524 4422481 ~ 4436431 (-) False XLOC_008974
TCONS_00017701 lncRNA upstream 668061 4429018 ~ 4445598 (-) False XLOC_008974
TCONS_00017703 lncRNA upstream 684103 4445060 ~ 4485867 (-) True XLOC_008974
TCONS_00018810 lncRNA upstream 1441294 5202251 ~ 5203167 (-) True XLOC_008986
TCONS_00017674 mRNA downstream 17793 3656212 ~ 3736773 (-) False XLOC_008956
TCONS_00017675 mRNA downstream 18417 3735068 ~ 3736149 (-) True XLOC_008956
TCONS_00017672 mRNA downstream 219861 3454529 ~ 3534705 (-) False XLOC_008955
TCONS_00017673 mRNA downstream 288551 3455839 ~ 3466015 (-) True XLOC_008955
TCONS_00017670 mRNA downstream 472346 3255054 ~ 3282220 (-) False XLOC_008954
TCONS_00017676 mRNA upstream 165138 3926095 ~ 3940671 (-) True XLOC_008958
TCONS_00017677 mRNA upstream 186739 3947696 ~ 3956906 (-) True XLOC_008959
TCONS_00017678 mRNA upstream 196919 3957876 ~ 3963649 (-) False XLOC_008960
TCONS_00017679 mRNA upstream 200452 3961409 ~ 3963649 (-) True XLOC_008960
TCONS_00017680 mRNA upstream 209840 3970797 ~ 3976035 (-) True XLOC_008961
TCONS_00017655 other downstream 1018068 2736383 ~ 2736498 (-) True XLOC_008940
TCONS_00017647 other downstream 1128903 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017639 other downstream 1488483 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017627 other downstream 1916683 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017597 other downstream 2432660 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017689 other upstream 343451 4104408 ~ 4104526 (-) True XLOC_008968
TCONS_00017694 other upstream 604201 4365158 ~ 4365272 (-) True XLOC_008973
TCONS_00017700 other upstream 665537 4426494 ~ 4482147 (-) False XLOC_008974
TCONS_00017702 other upstream 674508 4435465 ~ 4482230 (-) False XLOC_008974
TCONS_00017735 other upstream 1622105 5383062 ~ 5383180 (-) True XLOC_008997

Expression Profile

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