RNA id: TCONS_00017689


Basic Information

Item Value
RNA id TCONS_00017689
length 119
RNA type rRNA
GC content 0.47
exon number 1
gene id XLOC_008968
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 4101254 ~ 4124099 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATATCCATATTATATCACCCTGCAgaccaagaccggttactcactgaaggtaagcagggctgagcctggtcagtacttggatgggagaccacatgggaaaacatttgctgttggaaatg

Function

GO:

id name namespace
GO:0006302 double-strand break repair biological_process
GO:0006325 chromatin organization biological_process
GO:0045739 positive regulation of DNA repair biological_process
GO:0035518 histone H2A monoubiquitination biological_process
GO:0070535 histone H2A K63-linked ubiquitination biological_process
GO:0036351 histone H2A-K13 ubiquitination biological_process
GO:0036352 histone H2A-K15 ubiquitination biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0034244 negative regulation of transcription elongation from RNA polymerase II promoter biological_process
GO:0045190 isotype switching biological_process
GO:0010212 response to ionizing radiation biological_process
GO:0016567 protein ubiquitination biological_process
GO:0033522 histone H2A ubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0006281 DNA repair biological_process
GO:0035861 site of double-strand break cellular_component
GO:0000151 ubiquitin ligase complex cellular_component
GO:0005634 nucleus cellular_component
GO:0042393 histone binding molecular_function
GO:0070530 K63-linked polyubiquitin modification-dependent protein binding molecular_function
GO:0016740 transferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0003682 chromatin binding molecular_function
GO:0043130 ubiquitin binding molecular_function

KEGG:

id description
ko04121 Ubiquitin system
ko03400 DNA repair and recombination proteins

Ensembl:

ensembl_id ENSDART00000165191

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019117 lncRNA downstream 343451 3754566 ~ 3760957 (-) True XLOC_008957
TCONS_00019116 lncRNA downstream 941949 3160438 ~ 3162459 (-) True XLOC_008952
TCONS_00019115 lncRNA downstream 988146 3115337 ~ 3116262 (-) True XLOC_008951
TCONS_00017662 lncRNA downstream 1173387 2918257 ~ 2931021 (-) True XLOC_008946
TCONS_00019114 lncRNA downstream 1288266 2813516 ~ 2816142 (-) True XLOC_008942
TCONS_00019118 lncRNA upstream 59052 4163578 ~ 4174873 (-) True XLOC_008970
TCONS_00017697 lncRNA upstream 317955 4422481 ~ 4436431 (-) False XLOC_008974
TCONS_00017701 lncRNA upstream 324492 4429018 ~ 4445598 (-) False XLOC_008974
TCONS_00017703 lncRNA upstream 340534 4445060 ~ 4485867 (-) True XLOC_008974
TCONS_00018810 lncRNA upstream 1097725 5202251 ~ 5203167 (-) True XLOC_008986
TCONS_00017687 mRNA downstream 9520 4085623 ~ 4094888 (-) True XLOC_008967
TCONS_00017686 mRNA downstream 37250 4062000 ~ 4067158 (-) True XLOC_008966
TCONS_00017685 mRNA downstream 51259 4049222 ~ 4053149 (-) True XLOC_008965
TCONS_00017684 mRNA downstream 66782 4036709 ~ 4037626 (-) True XLOC_008964
TCONS_00017683 mRNA downstream 77041 4018362 ~ 4027367 (-) True XLOC_008963
TCONS_00017690 mRNA upstream 24034 4128560 ~ 4152582 (-) True XLOC_008969
TCONS_00017691 mRNA upstream 67762 4172288 ~ 4314097 (-) False XLOC_008971
TCONS_00017692 mRNA upstream 208553 4313079 ~ 4314042 (-) True XLOC_008971
TCONS_00017693 mRNA upstream 248635 4353161 ~ 4415917 (-) True XLOC_008972
TCONS_00017695 mRNA upstream 317271 4421797 ~ 4528387 (-) False XLOC_008974
TCONS_00017655 other downstream 1367910 2736383 ~ 2736498 (-) True XLOC_008940
TCONS_00017647 other downstream 1478745 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017639 other downstream 1838325 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017627 other downstream 2266525 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017597 other downstream 2782502 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017694 other upstream 260632 4365158 ~ 4365272 (-) True XLOC_008973
TCONS_00017700 other upstream 321968 4426494 ~ 4482147 (-) False XLOC_008974
TCONS_00017702 other upstream 330939 4435465 ~ 4482230 (-) False XLOC_008974
TCONS_00017735 other upstream 1278536 5383062 ~ 5383180 (-) True XLOC_008997
TCONS_00017752 other upstream 1684812 5789338 ~ 5795415 (-) False XLOC_009005