RNA id: TCONS_00001425


Basic Information

Item Value
RNA id TCONS_00001425
length 2623
RNA type mRNA
GC content 0.56
exon number 8
gene id XLOC_000904
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 44839 ~ 50247 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACTCTTGGTCAGAGCAGACACTGTGCGCGTTTCCCCAGGAAGGTGTAGAAAAGGAGAGATCAGAGTTTACCTGCGCCTTTACCTGTAGAGCAGCGGGAATACTGCAGCCGTCTCTGGACACGCGGAGGACACggacacacggacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccatcaggcGTCTCTGTGCGCATATTAAAGCACGGCTGCTTCCATGGGCCTGCAATACTGTGATGTACATCCCCCATGAAGCAGAGGCACACCTGTGCGCATGCGCCCGAGATGCACCTGTTTCGGTGGGTGGAgccctgatgatgatgatgatgatgagtggaGACGGACTACAGCAGAGAAACACACACCTGCCCAGAGACACACACAACTCCTGTATCTCCACACACACCTGCAGGAAGACCCGCTCGAGGAGCTGAAATGCTGATCTGACGGAGCTGCTCACCGGTACTGACACGCGCGCTGTTTCCGCTTCCGCTTGCCGGAGTTTCAGCAGATCATCATGATGAGGGGAATGATCAGgtgtgtgctgctgctgctgagtgTGCTGATCTCAGatGTTATGTCTATCCAGGTGATTCTGACCAATCAGCAGATGAGCACGACTCTGTTCGCCACGGTGACGCTGCGCTGTGATTACTCCACCTCCGCTCAGCTGCAGAATGTTCTGGTCACCTGGGTTTACAAGTCCTTCTGCAAAGACCCTGTTCTGGACTACTACTCTGCAGcgTATCAGTCTGCTCTGCAGCTGGGTCAGAACCCCGCCAATGACTGCACGGACTCGCAGCGCACCATCCGGACAGTGGCTCAGAAACTGGGCACTAATGAGGCGGTGCTGGGGGCCGAATACCGGGACCGCAAGATCTACATCCAGAACAaggCGGACCTGGTGATCCAAGAGGTGATGTGGTGGGATAACGGTGTGTATTACTGTAAAGTGGACGCGCCCGGAGACACCATCGGAGACCCAGACAAGGAGATGAACCTCATCGTCTACAACTGGCTGACGGTGCTCCTGATACTCATCGGTGCGCTGCTCCTCATCATCCTCTTCTGCATCTGCTGCTGCCAGTGCTGCCCACAGAAGTGCTGCTGTTACGTGCGCTGCCCGTGCTGCCCGCAGACCTGCTGCTGCCCGGAGAAAGcTGTGATGCAGCACCGGCTGATGAAGGAGGCGCAGAGGGCCATGACGCCCTGGATGAACGGGCAGCCGCTGTACGCCCCCATGAGCAACCACAGCTCCAGCTACCAGATGAACCCGCTGCTGTACGCAGGCTCCACCGCAGGTAAGGGCCCCATGACGCCACTGCCGCTGCCGCCTCCGCAGATGCCCGTCACACAGATGCCCCTCATGCAGATGCCTCCTCCCAGCATGCACGGCAATGGCAGCGCCCATGGCACCAATCAGGTCCTGGACTACCTGGAGAACCAGATGCGGGGCATAGACGTGAACAGCCCGCTCCTGCCCCCTCCACCGCAGCATGTGCCCCAGCACGTGCCCTTCTCCGCCGGGCCACCCAGCATGCTCTCTGGGCTGGAGGATGTCCCCGCGAAGCGTCCCCGTGGCCACCCGCACGCAAACTCCAGCGGCTCCTCAGCGTACGGCCCACGCCGCGGCCCCCCCACCTCGCTGCCGCGCAGCTACAGCCAGGAGGATGTGTTGGAGGGCCGCAGGGGCGCCGGAGCTCACAGACCCCGCTCGCGCTCCAGAGACGACCTGCTGCACACCGGCCCCCAGTACAGTCCGGCCCGCCGCGGCTCCTGGAGCTCCACTGATGAGGGCAGCCGGCGCGGGCCATGGGGGGGCAGGGAGTACGAGCCCGGGAAGAAGCCAGCGAAGCGACCCGAAAGATTCTCTGATAAGGGCTCTCGCAGTGGAAACAGCATCATCATCTGATCTCCATCTCCTCCTCCACCCACTGGACTCCGTCTGGTCTCCATCAGCTGTTACACTGACtgcagatcagtgtgtgtgtgtttcacaccGCTGTGCAGAGCAGCTTACACACTCCAGTGAATGTGAACATTAGCAAACATCCTCCGCTAACTGCTGAGGGCACTCATTTATGGGTACTTGGGTTTTAGGAATCAACTGTGTAAATATGACATGTGCTCAATATATTTATGATGAAGAGAGATTTAACAGTTCAGCTCCAGCATTTACCAGCCAGAGAGTGCACTACAGCACACTGTACACTACATAGTGCACTACACTATACAGTACACTATATAATACACTACACAGAACATACAGTACACTACATTATAATACACTATACAGTGCACTATAACAGCAGCTCGGAGCCTCTGTGATGATGGACCGCTGGGTTACTGAGCTACTGATCTGATGGAGatgctgattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtcgcTGTTCTTCTGTAAATAGTGTTGGAGTGTGAGTTGACCGTCTCTGTCCCGTTAGCCTGCAGGATTGTGATGTTTTTACTGTACATGATGAATATATTATTTTCCACCTGCTTCAATAaactgtgtgtgtaaatgtg

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1412 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in EVL; ectoderm; and sensory system. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 42. Orthologous to human ILDR1 (immunoglobulin like domain containing receptor 1).

Ensembl:

ensembl_id ENSDART00000168428

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003283 lncRNA downstream 293 42040 ~ 44546 (-) False XLOC_000903
TCONS_00001423 lncRNA downstream 293 42839 ~ 44546 (-) False XLOC_000903
TCONS_00001420 lncRNA downstream 2001 42040 ~ 42838 (-) False XLOC_000903
TCONS_00001416 lncRNA downstream 33114 6642 ~ 11725 (-) True XLOC_000902
TCONS_00001415 lncRNA downstream 34920 6642 ~ 9919 (-) False XLOC_000902
TCONS_00001433 lncRNA upstream 15458 65705 ~ 71494 (-) False XLOC_000906
TCONS_00001438 lncRNA upstream 17643 67890 ~ 71472 (-) True XLOC_000906
TCONS_00001439 lncRNA upstream 58038 108285 ~ 110804 (-) False XLOC_000907
TCONS_00003285 lncRNA upstream 58038 108285 ~ 147846 (-) True XLOC_000907
TCONS_00003286 lncRNA upstream 91042 141289 ~ 142119 (-) True XLOC_000908
TCONS_00001418 mRNA downstream 274 39325 ~ 44565 (-) False XLOC_000903
TCONS_00001419 mRNA downstream 305 41333 ~ 44534 (-) False XLOC_000903
TCONS_00001417 mRNA downstream 355 39313 ~ 44484 (-) False XLOC_000903
TCONS_00001422 mRNA downstream 525 42480 ~ 44314 (-) False XLOC_000903
TCONS_00001424 mRNA downstream 1057 43385 ~ 43782 (-) True XLOC_000903
TCONS_00001431 mRNA upstream 10732 60979 ~ 64829 (-) False XLOC_000905
TCONS_00001432 mRNA upstream 10740 60987 ~ 65017 (-) True XLOC_000905
TCONS_00001435 mRNA upstream 15458 65705 ~ 71523 (-) False XLOC_000906
TCONS_00001434 mRNA upstream 15458 65705 ~ 71523 (-) False XLOC_000906
TCONS_00001436 mRNA upstream 16036 66283 ~ 69444 (-) False XLOC_000906
TCONS_00001421 other downstream 293 42204 ~ 44546 (-) False XLOC_000903
TCONS_00001442 other upstream 102991 153238 ~ 153846 (-) False XLOC_000909
TCONS_00001460 other upstream 417496 467743 ~ 471925 (-) True XLOC_000917
TCONS_00001476 other upstream 570778 621025 ~ 625080 (-) False XLOC_000923
TCONS_00001485 other upstream 1000694 1050941 ~ 1051057 (-) True XLOC_000930
TCONS_00001486 other upstream 1263358 1313605 ~ 1315753 (-) True XLOC_000932

Expression Profile

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