RNA id: TCONS_00017697


Basic Information

Item Value
RNA id TCONS_00017697
length 1225
lncRNA type retained_intron
GC content 0.49
exon number 6
gene id XLOC_008974
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 4421797 ~ 4528387 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATGGATTTGACGTCATGTTTTCTTCCAGCGCAATCTGCTATTGATCTACACTGTCTCCGACTGGCCTTTCACATATGAAATATGCATATGCTCGCCACTTAAACGGCCATCACTTTACTGGCCAACAGTTTACACAGCCGAGTAAAACAGAGCTGCAGCCTCCCCTGTTAAATAGCTGTGATTTATCAGTCTGAAGGACGTCCAGCTCTTCCTGCAGTCCTGCACAGTGTCCACCTCTCGTCTGGCACTCATCACCCCTAAGCAGGAACACACACTTCACGTTGATCTCGGATAATATCTCTTATTTGTAATGAGACTTCGGGTTTGGATCGTTGCATAAGAGCTGTTTTGTCCCCGCAGCGAGCAAATATTTTCCGCTATTAGTCCTGACAGTCCTCTCGATGTTTTAATCCTGCTGGAACGCTGAAAAGgtgtaattaaaaaaagatgcaGGAAGTTTTTGGGGCTGAATGATCACACATCTGCTTGCTCCTTGTTCATGAaaaaggtgtgtgtttgtgcttgcaGCAGGTGTACGACCAGAAAAACATTCGCCGGCGTGTGTATGACGCGCTCAACGTGCTGATGGCCATGAACATTATCTCCAAAGAGAAGAAGGAGATACGCTGGATCGGCCTTCCCACAAACTCAGCCCAGGAGTGCCGCAActtagagTTGGAAAAACAGAAGCGTTTGGAAAGAATCCGGCAGAAACGAGCGCAGCTAGAAGAGCTAATATTACAGCAGGTCGCCTTTAAGAATCTGGTGCAGAGGAACCAGGCCAGCGAAGCGTCGTCCCGTTCCAGTCCTCCTGCAGGATCTGTCATTCAGCTTCCCTTTATCATTCTCAACACAGACGTCCGCACCGTCATCGACTGCTCCATCTCTAGCGACAAGTGTGAATACCTCTTCAACTTTGACAACACGTTTGAGATTCACGATGACGTTGAGATCCTGAAGCGGATGGGAATGTCTCTGGGCCTTGAGAACGGCACATGCTCTCCACAAAACCTCACTCTGGCCAAATCTCTGGTGCCCAAATCTCTCGAAGCTTACATCACCAATATGGCTAGAAATTCCACCAGAACACCTCTCAGCCTCACAAGCAGCACTGCCCTGTCACATACCTCCGAGTCCCGCGTGCTGACGCCCAGCTCCTTCAACGAGGACGATGATGAGGACGATGATGACGACGACAGCCCCTCATCTCCAGAGTGATGCTTT

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0008134 transcription factor binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003712 transcription coregulator activity molecular_function

KEGG:

id description
ko04110 Cell cycle
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-030219-104 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to contribute to RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of cell cycle and regulation of transcription, DNA-templated. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Is expressed in brain and spinal cord. Orthologous to human TFDP2 (transcription factor Dp-2).

Ensembl:

ensembl_id ENSDART00000154297

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019118 lncRNA downstream 247608 4163578 ~ 4174873 (-) True XLOC_008970
TCONS_00019117 lncRNA downstream 661524 3754566 ~ 3760957 (-) True XLOC_008957
TCONS_00019116 lncRNA downstream 1260022 3160438 ~ 3162459 (-) True XLOC_008952
TCONS_00019115 lncRNA downstream 1306219 3115337 ~ 3116262 (-) True XLOC_008951
TCONS_00017662 lncRNA downstream 1491460 2918257 ~ 2931021 (-) True XLOC_008946
TCONS_00017703 lncRNA upstream 8629 4445060 ~ 4485867 (-) True XLOC_008974
TCONS_00018810 lncRNA upstream 765820 5202251 ~ 5203167 (-) True XLOC_008986
TCONS_00018811 lncRNA upstream 779377 5215808 ~ 5217706 (-) True XLOC_008989
TCONS_00017751 lncRNA upstream 1350755 5787186 ~ 5791331 (-) False XLOC_009005
TCONS_00017753 lncRNA upstream 1358532 5794963 ~ 5797918 (-) True XLOC_009005
TCONS_00017693 mRNA downstream 6564 4353161 ~ 4415917 (-) True XLOC_008972
TCONS_00017691 mRNA downstream 108384 4172288 ~ 4314097 (-) False XLOC_008971
TCONS_00017692 mRNA downstream 108439 4313079 ~ 4314042 (-) True XLOC_008971
TCONS_00017690 mRNA downstream 269899 4128560 ~ 4152582 (-) True XLOC_008969
TCONS_00017688 mRNA downstream 298382 4101254 ~ 4124099 (-) False XLOC_008968
TCONS_00017704 mRNA upstream 112809 4549240 ~ 4580763 (-) False XLOC_008975
TCONS_00017705 mRNA upstream 112810 4549241 ~ 4568154 (-) True XLOC_008975
TCONS_00017706 mRNA upstream 148835 4585266 ~ 4616928 (-) False XLOC_008976
TCONS_00017708 mRNA upstream 148970 4585401 ~ 4616816 (-) False XLOC_008976
TCONS_00017707 mRNA upstream 148970 4585401 ~ 4616816 (-) False XLOC_008976
TCONS_00017694 other downstream 57209 4365158 ~ 4365272 (-) True XLOC_008973
TCONS_00017689 other downstream 317955 4104408 ~ 4104526 (-) True XLOC_008968
TCONS_00017655 other downstream 1685983 2736383 ~ 2736498 (-) True XLOC_008940
TCONS_00017647 other downstream 1796818 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017639 other downstream 2156398 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017735 other upstream 946631 5383062 ~ 5383180 (-) True XLOC_008997
TCONS_00017752 other upstream 1352907 5789338 ~ 5795415 (-) False XLOC_009005
TCONS_00017769 other upstream 2490587 6927018 ~ 6946091 (-) False XLOC_009012
TCONS_00017770 other upstream 2502457 6938888 ~ 6940927 (-) True XLOC_009012
TCONS_00017772 other upstream 2512240 6948671 ~ 6966239 (-) False XLOC_009013

Expression Profile

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