RNA id: TCONS_00017705


Basic Information

Item Value
RNA id TCONS_00017705
length 1445
RNA type mRNA
GC content 0.51
exon number 5
gene id XLOC_008975
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 4549240 ~ 4580763 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGGTTTGATCTGAGCTGATTCAGTGTGTGGTTTGCTTGTAACAGACGCATGCTTTTTTTCCCTGTGTGTTTTCCAGTAGGTGTGGAGCATGTGGGCCAGCTGCTGCGGCTGGCTATGTCTGGATGATTCCAGTATGGAAGACACCAGAGGAAGCCAACAGCGCCAGGCCTTCACGAACTCAGGCTTCAGCAGTTACCCGTCTCCCACTGCACCAGAACACACATGCAAGTCCTGTGGAGGTCGCTTCGACAGTTTAACCAGGAAGCACGTGTGCATGGACTGCAAGAAGAGCTACTGCAGCCAGTGCTCCACTCAGCAGGAGCTCCAGCCGTGGCTGTGCCGCACCTGCCAGCGTTTCCGCGGCATCTTGTTGGAGCGAGCAGAACTCATGAAGCTCAAGGTGAAGGATCTCAGGGACTACCTTCACCTGCACGGCGTCCCGACGCAGATGTGCCGTGAGAAGGAGGAGCTGGTCGAGCTGGTTCTCGGCCAGCAGACGCCCACGTCTGACACGCACATTCCAGCCCCAGAAACCACACGCTTAGACCAGCAGGAGACCCTGGACACTCCCGTCATTACAGTGAGCCCGTCAGGGAACAACAACACAACAGAACTGGGACCACAAACACAAGCCATGGACAATGGACAGTTTTCAGACTCAGAGGAAGTTTTGGCTCCTGGCCGACGGGCGTCTCTCTCAGACCTAGGATCAGTGGAGGATATTGAGGATTTAAGTGTCCGGCAGTTGAAGGAGATTCTAGCCCGAAACTTTGTCGACTACAAGGGCTGCTGTGAGAAATGGGAGTTGATGGAGAGGGTCACCCGCCTGTACAACGACCAGAAGGACCTGCAAAACATGGTGTCTAATGCTACAGAAGGCACAGACACTGGCTCTGGGACGGCCGTGGAGGAGAACCTCTGTAAGATCTGTATGGACTCACCCATCGACTGTGTGCTTCTGGAGTGCGGACACATGGTCACGTGCACAAAGTGTGGCAAACGCATGAGCGAATGTCCCATCTGCCGACAGTACGTGGTGCGGGCAGTGCACGTGTTCAGATCCTGAACAACATTTTCCATTCTCGGAGATCTTCCCCTGATCAACAGATACTGTAGAAAACCATCATGTGGCCTTTAAATCTTGCACAGTTTATCCTGTGGCACTTTATATGTGATAATGACTGAGACGCGCAAATCTCAAACCAATAACTGCGCTGGTTTTACTTTCATTTCTTCAAAAGTGCGTCTTCTGGATATTTTGAAGAGGAAGAAGCTGTTCGTAATCATGGATCACATGTTTGTTAGATGACAAAAATCAGTGCAGCAATAATGCCCATTTCTGCTATTGGTAGGATCATATGAATGTTATAAGCACAGATAGCATCTTCAGAAAGTGCCTTGCATGTCACTGCCCTGCTGCTTTTAATACACCTGTTTATCAAGC

Function

GO:

id name namespace
GO:1902042 negative regulation of extrinsic apoptotic signaling pathway via death domain receptors biological_process
GO:2001271 negative regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0070936 protein K48-linked ubiquitination biological_process
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2274 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in cellular protein metabolic process and negative regulation of apoptotic process. Predicted to act upstream of or within apoptotic process. Predicted to be located in membrane. Predicted to be active in cytoplasm and plasma membrane. Orthologous to human RFFL (ring finger and FYVE like domain containing E3 ubiquitin protein ligase).

Ensembl:

ensembl_id ENSDART00000155254

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00017703 lncRNA downstream 63374 4445060 ~ 4485867 (-) True XLOC_008974
TCONS_00017701 lncRNA downstream 103643 4429018 ~ 4445598 (-) False XLOC_008974
TCONS_00017697 lncRNA downstream 112810 4422481 ~ 4436431 (-) False XLOC_008974
TCONS_00019118 lncRNA downstream 374368 4163578 ~ 4174873 (-) True XLOC_008970
TCONS_00019117 lncRNA downstream 788284 3754566 ~ 3760957 (-) True XLOC_008957
TCONS_00018810 lncRNA upstream 634097 5202251 ~ 5203167 (-) True XLOC_008986
TCONS_00018811 lncRNA upstream 647654 5215808 ~ 5217706 (-) True XLOC_008989
TCONS_00017751 lncRNA upstream 1219032 5787186 ~ 5791331 (-) False XLOC_009005
TCONS_00017753 lncRNA upstream 1226809 5794963 ~ 5797918 (-) True XLOC_009005
TCONS_00017759 lncRNA upstream 1330256 5898410 ~ 5901485 (-) False XLOC_009008
TCONS_00017695 mRNA downstream 20854 4421797 ~ 4528387 (-) False XLOC_008974
TCONS_00017696 mRNA downstream 20854 4421798 ~ 4528387 (-) False XLOC_008974
TCONS_00017698 mRNA downstream 20915 4426123 ~ 4528326 (-) False XLOC_008974
TCONS_00017699 mRNA downstream 63413 4426391 ~ 4485828 (-) False XLOC_008974
TCONS_00017693 mRNA downstream 133324 4353161 ~ 4415917 (-) True XLOC_008972
TCONS_00017706 mRNA upstream 17112 4585266 ~ 4616928 (-) False XLOC_008976
TCONS_00017708 mRNA upstream 17247 4585401 ~ 4616816 (-) False XLOC_008976
TCONS_00017707 mRNA upstream 17247 4585401 ~ 4616816 (-) False XLOC_008976
TCONS_00017709 mRNA upstream 18097 4586251 ~ 4596623 (-) True XLOC_008976
TCONS_00017710 mRNA upstream 389630 4957784 ~ 4967302 (-) False XLOC_008977
TCONS_00017702 other downstream 67011 4435465 ~ 4482230 (-) False XLOC_008974
TCONS_00017700 other downstream 67094 4426494 ~ 4482147 (-) False XLOC_008974
TCONS_00017694 other downstream 183969 4365158 ~ 4365272 (-) True XLOC_008973
TCONS_00017689 other downstream 444715 4104408 ~ 4104526 (-) True XLOC_008968
TCONS_00017655 other downstream 1812743 2736383 ~ 2736498 (-) True XLOC_008940
TCONS_00017735 other upstream 814908 5383062 ~ 5383180 (-) True XLOC_008997
TCONS_00017752 other upstream 1221184 5789338 ~ 5795415 (-) False XLOC_009005
TCONS_00017769 other upstream 2358864 6927018 ~ 6946091 (-) False XLOC_009012
TCONS_00017770 other upstream 2370734 6938888 ~ 6940927 (-) True XLOC_009012
TCONS_00017772 other upstream 2380517 6948671 ~ 6966239 (-) False XLOC_009013

Expression Profile

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