RNA id: TCONS_00001429


Basic Information

Item Value
RNA id TCONS_00001429
length 618
RNA type nonsense_mediated_decay
GC content 0.56
exon number 4
gene id XLOC_000904
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 44839 ~ 50247 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACACACACAACTCCTGTATCTCCACACACACCTGCAGGAAGACCCGCTCGAGGAGCTGAAATGCTGATCTGACGGAGCTGCTCACCGGTACTGACACGCGCGCTGTTTCCGCTTCCGCTTGCCGGAGTTTCAGCAGATCATCATGATGAGGGGAATGATCAGgtgtgtgctgctgctgctgagtgTGCTGATCTCAGatGTTATGTCTATCCAGGTGATTCTGACCAATCAGCAGATGAGCACGACTCTGTTCGCCACGGTGACGCTGCGCTGTGATTACTCCACCTCCGCTCAGCTGCAGAATGTTCTGGTCACCTGGGTTTACAAGTCCTTCTGCAAAGACCCTGTTCTGGACTACTACTCTGCAGCTGGGTCAGAACCCCGCCAATGACTGCACGGACTCGCAGCGCACCATCCGGACAGTGGCTCAGAAACTGGGCACTAATGAGGCGGTGCTGGGGGCCGAATACCGGGACCGCAAGATCTACATCCAGAACAaggCGGACCTGGTGATCCAAGAGGTGATGTGGTGGGATAACGGTGTGTATTACTGTAAAGTGGACGCGCCCGGAGACACCATCGGAGACCCAGACAAGGAGATGAACCTCATCGTCTAC

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1412 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in EVL; ectoderm; and sensory system. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 42. Orthologous to human ILDR1 (immunoglobulin like domain containing receptor 1).

Ensembl:

ensembl_id ENSDART00000161565

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003283 lncRNA downstream 3408 42040 ~ 44546 (-) False XLOC_000903
TCONS_00001423 lncRNA downstream 3408 42839 ~ 44546 (-) False XLOC_000903
TCONS_00001420 lncRNA downstream 5116 42040 ~ 42838 (-) False XLOC_000903
TCONS_00001416 lncRNA downstream 36229 6642 ~ 11725 (-) True XLOC_000902
TCONS_00001415 lncRNA downstream 38035 6642 ~ 9919 (-) False XLOC_000902
TCONS_00001433 lncRNA upstream 15870 65705 ~ 71494 (-) False XLOC_000906
TCONS_00001438 lncRNA upstream 18055 67890 ~ 71472 (-) True XLOC_000906
TCONS_00001439 lncRNA upstream 58450 108285 ~ 110804 (-) False XLOC_000907
TCONS_00003285 lncRNA upstream 58450 108285 ~ 147846 (-) True XLOC_000907
TCONS_00003286 lncRNA upstream 91454 141289 ~ 142119 (-) True XLOC_000908
TCONS_00001418 mRNA downstream 3389 39325 ~ 44565 (-) False XLOC_000903
TCONS_00001419 mRNA downstream 3420 41333 ~ 44534 (-) False XLOC_000903
TCONS_00001417 mRNA downstream 3470 39313 ~ 44484 (-) False XLOC_000903
TCONS_00001422 mRNA downstream 3640 42480 ~ 44314 (-) False XLOC_000903
TCONS_00001424 mRNA downstream 4172 43385 ~ 43782 (-) True XLOC_000903
TCONS_00001431 mRNA upstream 11144 60979 ~ 64829 (-) False XLOC_000905
TCONS_00001432 mRNA upstream 11152 60987 ~ 65017 (-) True XLOC_000905
TCONS_00001435 mRNA upstream 15870 65705 ~ 71523 (-) False XLOC_000906
TCONS_00001434 mRNA upstream 15870 65705 ~ 71523 (-) False XLOC_000906
TCONS_00001436 mRNA upstream 16448 66283 ~ 69444 (-) False XLOC_000906
TCONS_00001421 other downstream 3408 42204 ~ 44546 (-) False XLOC_000903
TCONS_00001442 other upstream 103403 153238 ~ 153846 (-) False XLOC_000909
TCONS_00001460 other upstream 417908 467743 ~ 471925 (-) True XLOC_000917
TCONS_00001476 other upstream 571190 621025 ~ 625080 (-) False XLOC_000923
TCONS_00001485 other upstream 1001106 1050941 ~ 1051057 (-) True XLOC_000930
TCONS_00001486 other upstream 1263770 1313605 ~ 1315753 (-) True XLOC_000932

Expression Profile

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