RNA id: TCONS_00001433


Basic Information

Item Value
RNA id TCONS_00001433
length 3548
lncRNA type retained_intron
GC content 0.48
exon number 5
gene id XLOC_000906
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 65705 ~ 71523 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAACACTGCTGGAGCTGAGATGGCGGACACACTGCGCTTACTGGGCTTCATCCTGCTGAGCGgaCTGCATGTGGCATCAGCAGCGATCGTGGTTGATATCCCGCAGAAGCAGTATAAGGTAGCGCGGGGTGATAATGCGACGCTGCCCTGCGCCTTCACCCCGCCGCCGCCGGCCGGATCCACCACTGAGATCACCTGGAAAGCGACTCCAGATGTGCCGGGATCTCCAATGGTGAAACACACACTCTACCAACATGCTGAGCTGTTATAAGCCAGTGCTGGGTCATACACAACAATGGGTTCAAAGTTAcaattaaacttaaattaaaccTTTAACCAGCAGATTTTCTCTCCATATTTGGACCCAACAGCACATTTCTGAGTGTTTGTGTCCGTAACACAGTTTGTTTGCTCTGCTGTCCCCCAGATCGACATCATCAAATTCAACAGTGCCACTGGAATGAAGGTGTACAAGAACTATAAGGGCCGGGCGGGTCTGACGTTTGATCTGACTAAAGGAAAAGCCGACCTGCAGCTGGTGAGGGTCACCAGTGCCGACAACCGGACCTACGAGTGCCATGTGGACGTGCAGGAGGAAGAGGACGGCACTCTATCAGACACCGCCAACCTCATTGTCCTGGGTGAGATCACACACTACTGGCCATAACCTCTGTCATCTGTCTGTCTAATGAaggcaaataataaaaataatcttaaaaaagtcattaaaaaggTGAAATGTGCTGCAGATTGAGCTGTACAGATACGCTATATTACACAGATGCGGCTCACTCCAGAGCCAGTGGGTGGAGCTCGACAATCCAACCACACCCTAAAGTAATCAATCACTAAACATAACCCCACCCATTCGGTCCACAGAGGCGGAGCTGGACCAGTCCAGGCTCCGCCCAATACAGCCAGAGCTGAGCCAGGCGTTGTATATTTTTAGAAATGAGCGATGTGTGTATAACCTCCTGTGAATACAACCTCCAACCCTCAATCACAAGCCCAATTCTCCAATCATAAGGTCACAGCTAGCCTAGGCTCCACCCACTTCACTTAGAGGGGTGGAGCTTGACCATTTCTCACAATCTCATCAACGTCTGTCACAATCAGGCAGCGCAGACAACACAACAACATATGAAGAGAACAACAAACGGCTTCCTGTAGATGATGACCGCTGTTTTCTTCATCTGAGTGCTGATGTAGTTTCATTATTCTCAGTTTGTGGGTTAGGGTTGTTTCACGATAGTCATTAAAGTCTCTCTTGTGTCTCTGTTGTACACCAGTGGCCCCATCAACACCCAAATGCACTATTGAGGGGAAGACGGAGTACTTTCAGGACATCACCCTGACCTGCAAATCGGAGGAGGGAACGCCGACACCGACCTACAAGTGGCAAAGCTACGATGTGTTGAACAACCCTCGCCCAAACCCACTGAAGGCCACCGACGTGAACGGCGTTCTGTCGCTCTACAACATCTCTAAGGACACGTCCGGGTTCTACGTCTGCACCTCCACCAATGAAATCAGATCTGCCAAGTGTAATCTGACTATGGCCGTCATGGCACCGTCCATGAGCATGGCGTCCACGGCGGGCATCATCGGGGCGGCGGCGGGCGCGCTGGTCCTCCTGCTGGTCATCatcatctgctgctgctgctgccggAGGAAGAAGAACAAGGAGGAGGAGTACGCCATGGGGACTCCTGAAGATGGAGAATTCACAGACAAGGATCCGGAGGAGCAAGACGAACACGTGCGGTCTGAGCAGGAGCGTCCGGTGAAGAGCGCAGACCGCAGAGATGTGCAGGACGAGCGCAGCGAGAGGAGCTACGACCGCCGCAGTGACTACGACGACCGCCGAGATCCGAACACCAGCCAGCGGGATGATCGTGATGACCGATACAATGACCGCCGCGACCGATACGATGACAAACGCGACCGGAGTGATGACCGCCAGGAACGCTACGATGACCGCCGGGAACGCAACGGTGACCGCCAAGATCGTTACGATGACCGACGTGATCGCAATGATGACCGCAGAGATCGTTACGATGACCGCTACGATGATCGACGCGACCGCTACGATGACCGCAGAGATCGCCATGATGACCGCTACGACAGCGACCGCTACTCTGACCGCTACGACAGCCGCGACAGACCGCCCAGCGTCCCCCCAAATAAACCCAGAGATCCGCGGAATTGATTCGTTCCTCAGAAACGCAGGATATAGAGATATCTGACATCCTGAAGCAGGAGATTTCATCCTACACACATGTGCTAGTGCTGACCAACATCTCCTATCGCCATATCAATCATCTCATATCCTGAAAACCATGCGCTCAACGATATCGCCATCATTCagcaaattcaattaaataatataattatatatcgCGAACACACGACTGtttctcttttacattttaatatatttgctcAAATGTGATTTTCTTTCAGGGCAAATGTTCGATTAGGAacgtttaaatattaaataactataATGACAGATAAAACACGCTTCAAAGATATTGCGAAAGCACTGCACGTTTTCCTCATGCTGTTACTCTGGCTTCTGCCTGCATCCCTGTGCTGGGTTATCCACATCCAATTGAGGAACAGGTATTGCTGTAAACGGTGTATTTGCCACaccataaaataaacaagcacaaCAGGAAACGCCATGTTGCTCAGCCCTGGTTGCGGTCTTTAACACTTGACTCCGATTGGTCAGTCACAaaattccaaggtatgttattcagAAACTTATAAGACACTTCAAATCTTTATCTTGAGCGTCAGTGAACACGTTCCTCCATATACGCTTCTGTTTCGccgctgtttttgactgtttggcgccctcttgtgactgaataatgtgcaggttagtgtatactcctttCAGCTgtatttgtttctgtcagctttgtctTTAATAAATGAATGCTATATTTAGTCTCAGAACAATGTTTATTTGTtagatatttacattttctgGCGAGCAGCCGTATAATAAACTGGATAAAGCACACCCAGCCGGGGGGTTTCTCAGAATAAACCCTTCTATTGTGAATGTTCTGTTGTTCCTCTTTGTTTCTGTTGTTGACGGGGGATTACCGTGAAACACATGTCtgttaaaactttaaatataGAATGAATATACCAGACTTCAGTTTATTTCTCTTTAATTTTGTTCTGTTTGTAAATGAAATATTCATCATGTGTGTTGCTGGCTGTAAGACTGGTTTAGCGGAGTTCCCGGTGCAGCTGTTTAACATTCAGACTTCTGTTTTCATCTGTGACAGACAGTGAAGCTGAGTTTTGTGGCCTGACCGACCCGTTTACTTCACTTTATATTGCGATGATGTCACAGGAAGTGTATTTATGACAGACTGCATCGATCAGCTTAACCAGATCATTCTGCCTGTATAATTCAGGGTTTTGATCTGTGCATTACTCTGTATGTTCTGATGGTGTTTCTCACGCCATGTAGTTACTGTTACTGTTATCTGATGAtcattaaacatgtttttacttCATGGAAA

Function

GO:

id name namespace
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-080229-4 Predicted to act upstream of or within cell morphogenesis and immune response. Predicted to be located in membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including EVL; digestive system; epidermis; periderm; and sensory system. Orthologous to human GPA33 (glycoprotein A33).

Ensembl:

ensembl_id ENSDART00000164282

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003284 lncRNA downstream 15863 47420 ~ 49842 (-) False XLOC_000904
TCONS_00001430 lncRNA downstream 15863 48877 ~ 49842 (-) True XLOC_000904
TCONS_00001428 lncRNA downstream 16010 47820 ~ 49695 (-) False XLOC_000904
TCONS_00001427 lncRNA downstream 17628 47420 ~ 48077 (-) False XLOC_000904
TCONS_00003283 lncRNA downstream 21159 42040 ~ 44546 (-) False XLOC_000903
TCONS_00001439 lncRNA upstream 36791 108285 ~ 110804 (-) False XLOC_000907
TCONS_00003285 lncRNA upstream 36791 108285 ~ 147846 (-) True XLOC_000907
TCONS_00003286 lncRNA upstream 69795 141289 ~ 142119 (-) True XLOC_000908
TCONS_00003287 lncRNA upstream 81744 153238 ~ 157554 (-) False XLOC_000909
TCONS_00001443 lncRNA upstream 82149 153643 ~ 157554 (-) False XLOC_000909
TCONS_00001432 mRNA downstream 688 60987 ~ 65017 (-) True XLOC_000905
TCONS_00001431 mRNA downstream 876 60979 ~ 64829 (-) False XLOC_000905
TCONS_00001425 mRNA downstream 15458 44839 ~ 50247 (-) False XLOC_000904
TCONS_00001426 mRNA downstream 16772 46037 ~ 48933 (-) False XLOC_000904
TCONS_00001418 mRNA downstream 21140 39325 ~ 44565 (-) False XLOC_000903
TCONS_00001440 mRNA upstream 80513 152007 ~ 157563 (-) False XLOC_000909
TCONS_00001441 mRNA upstream 80822 152316 ~ 156375 (-) False XLOC_000909
TCONS_00001447 mRNA upstream 88808 160302 ~ 201004 (-) False XLOC_000910
TCONS_00001448 mRNA upstream 113421 184915 ~ 191971 (-) False XLOC_000911
TCONS_00001449 mRNA upstream 113422 184916 ~ 192033 (-) False XLOC_000911
TCONS_00001429 other downstream 15870 47954 ~ 49835 (-) False XLOC_000904
TCONS_00001421 other downstream 21159 42204 ~ 44546 (-) False XLOC_000903
TCONS_00001442 other upstream 81744 153238 ~ 153846 (-) False XLOC_000909
TCONS_00001460 other upstream 396249 467743 ~ 471925 (-) True XLOC_000917
TCONS_00001476 other upstream 549531 621025 ~ 625080 (-) False XLOC_000923
TCONS_00001485 other upstream 979447 1050941 ~ 1051057 (-) True XLOC_000930
TCONS_00001486 other upstream 1242111 1313605 ~ 1315753 (-) True XLOC_000932

Expression Profile

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