RNA id: CI01000110_02890041_02906679.mRNA


Basic Information

Item Value
RNA id CI01000110_02890041_02906679.mRNA
length 2467
RNA type mRNA
GC content 0.37
exon number 7
gene id CI01000110_02890041_02906679
representative False

Chromosome Information

Item Value
chromosome id CI01000110
NCBI id null
chromosome length 4324856
location 2889879 ~ 2908219 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACACACCATATCAGTCCAGCACTGACAGCGTGAAAAAAAGTCCAGCTTTGATGACATGAGAGCTAACAGAGATGTTTTGATTGGAGTGAAATTAAGATAAATAGGAAGGGTGTATTTGTGCGAGTGTGCATGTGTGGGTTTCCAATTTTACAACAGTATTTACACACTAGTAATCTTCAGGGACTTTGCGCAAGAGTTGCATCAAGTCGAAAAATTCAGGCCACTTTCAATGAATAGTGTTAAAATTGTGTCTCAATAAAATATCAGAGTAAAATATTAAATAATGCATGCTAGATAAACTATCACAAAAACAGAATTAACATGATAAGTAGGTAATTTGGTCACACTTTAGATTAGAGTCCAATTCTCACTATTAGCTAAGAATTAACTATGACTTTTCCCTCAATAAACTCCTAATGACTGCTTATTAATAGTTAGTAAGGTAGTTGTTAAGTTTAGGTATTGGGTAGGATTAAGGGATGTAGAATATGATCATACAGATTAATGGCTGTTTATTAGTACTTATAAAGCACATATTAATTATAAGTACTAATAAACAGCCAATATAATATGCATGCTAATGAGCAACTAGTTAATAGTGAGAACTGGACCATAAACTAAAGTGTTACCACTATTTTTTTTTTACTTTAAATGTCCCTAAAATGGTTCTGGCCTGTAAATAAAATCATAGAAATAAATAAAAGTATAGAATCATTGGTAACACTTTAGTATAGGGAACATGTATTATCTATTAACTATGACTTTTCCCTCAATAAACTCATAATTTACTGGTTATTATTAGTTAGTAAGCTAGTTGTCAAGTTTAGGTATTGGGTAGGATTAAGAATGTAGAATAATGGCATTAATATGTGCTTAATAATTAGTAATAAACAACCAATATTCTAGTAATATGCATGCTGCATAAATAGACATACATAAATCCTGTAGCAGATCTAGGCAGGTGGAGCTGGGGGAGGTGGAGGGTTTTAGAGCAACTCTGATTGCGGCTGCAGGACTAGCTTATAGCAATTAATGAACCAGACTATTTAAATGTTGAGCAAGCAATCTCATTGGCTGCAGGATCAGCAGAGGCCAATCAGCTTGTGCCATGTGGTGATGATGTGATCTATCAGCCTGCACCCTCTAGAGTTTCATGACTGAACTAGACATTTTACCAAAACATAATATTTGTCCTACATTTTGAGTTCAAATAAACAAACAAACAAAAATAATTTTTTTAATTTATATACATTGTATTTAATATGTTTGTATATTTCACATTAACATTACATAAAAAGTGAATACAAAATAAACAGGTCATTTCATACTTTGTATGAACCTCTGAAGTGGATGTTCAATGTTTTCTGAGAATGAACACTTCCTTACACTATATTAAAAAATAAACTATTACATTTCAAACCCTATTATGTACCATTTTTATGAAATCTGCTTTATTAATTTTTTTTTATAATAATTAGGCGCATACTTACAAGATTACACAAATTATCAGTCTCCAAAGAGGTCATGATTCGGCCACAATATGAGTGCGTTCATTTATTTCTTCATTTCCTCTCAGAACTTAAAACATTATTCTGACATTAACATATCATGTCTGCGAGGCAGTGCAAAGGTCAAGAAATGGGTTTGCCAAGGCCCCCTAGTGGGCACTCTTGTTGCAAACTACTGGTGTAAACTATCTATTTCTGTTGTTAAGATTCTCTTAAAGATCAATTACTGTCTTGGTGGAGCAGCGGTTTATAATGGAACAGAAACTTTCCCTTGTTCATCTATACAGGGTCAGACAGAAGCGCCTGATGTATTTGCTGCTTGGCTGCTCTCAGAGATTGCTATCAGCCAAGACTCGTCCGTGGAGAGATGCAATACAAATGTAATGCAAGATGAACCAATCAATAGAGGTGTAATGTTGAAGCCAGGACCTCGGTTTGTAGATGTGTTTTCAATAATAAGGCCGAAGCGCAAAGCCAATCACCATTTGCCTGCAATCGCATTTTCAGAGGCATTTCAGGCCAGCAAGTTTATCAAAGGCAAGGTGGTGTTAAGTTGCACAGGGAATATTCTCATAACACACGATACACCACAGATGATTCTGCACAGCTCTCTGATGCTAATTACAAACTGCCTGCGTTGTGTAGCGTTGTGTAGCACCTTTGATATTAGCTTTAGAGAGAGCAGCCCAGCTCTCACCTCACTAACTGCAGCTGGGACAAACCTCTGCCCCACACCCGGAGCCTGGAGCCTTTGGCTCTCAACCCACACCCACTACAGTGGGAACGGCAGCGCAGCAGAAACGCTTCCAGCACCTCCAGTCCCAGATTCCCACTGTGGGAACACGGCTGTAGGCCATGCTTTCTCTCTGTCTCCTTAATGAGGCCCCATTTGCACCTCCTGTTCCCAATCCCAAGCTATCAGGACCACCACCACAGATAAAAATGTAGATGAAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU369164 lncRNA downstream 177717 2664187 ~ 2712243 (-) True G324755
TU368512 lncRNA downstream 411766 2477987 ~ 2478194 (-) True G324142
TU368488 lncRNA downstream 437321 2452275 ~ 2452639 (-) True G324118
TU368473 lncRNA downstream 459047 2430685 ~ 2430913 (-) True G324103
TU368404 lncRNA downstream 545751 2343876 ~ 2344209 (-) True G324034
TU369325 lncRNA upstream 45013 2953232 ~ 2959837 (-) True G324909
TU369371 lncRNA upstream 105454 3013673 ~ 3120099 (-) False G324936
TU369396 lncRNA upstream 119038 3027257 ~ 3033466 (-) True G324960
TU369375 lncRNA upstream 122795 3031014 ~ 3032019 (-) True G324939
TU369356 lncRNA upstream 207239 3115458 ~ 3120099 (-) False G324936
CI01000110_02794268_02794597.mRNA mRNA downstream 95363 2794182 ~ 2794597 (-) True CI01000110_02794268_02794597
CI01000110_01988105_01990600.mRNA mRNA downstream 898219 1986589 ~ 1991741 (-) True CI01000110_01988105_01990600
CI01000110_01864492_01865547.mRNA mRNA downstream 1024413 1864478 ~ 1865547 (-) True CI01000110_01864492_01865547
CI01000110_01436253_01450759.mRNA mRNA downstream 1439201 1436205 ~ 1450759 (-) True CI01000110_01436253_01450759
CI01000110_01432049_01434499.mRNA mRNA downstream 1455461 1431705 ~ 1434499 (-) True CI01000110_01432049_01434499
CI01000110_03015589_03024689.mRNA mRNA upstream 107031 3015250 ~ 3025361 (-) True CI01000110_03015589_03024689
CI01000110_03084686_03087106.mRNA mRNA upstream 176220 3084439 ~ 3087106 (-) True CI01000110_03084686_03087106
CI01000110_03095980_03103572.mRNA mRNA upstream 187237 3095456 ~ 3103572 (-) True CI01000110_03095980_03103572
CI01000110_03122088_03123095.mRNA mRNA upstream 213444 3121663 ~ 3123095 (-) True CI01000110_03122088_03123095
CI01000110_03138199_03142034.mRNA mRNA upstream 229061 3137280 ~ 3142354 (-) True CI01000110_03138199_03142034
TU367430 other downstream 1653111 1205829 ~ 1236849 (-) True G323133
TU367428 other downstream 1675570 1205829 ~ 1214390 (-) False G323133
TU366784 other downstream 2784141 103265 ~ 105819 (-) True G322580
TU369365 other upstream 207239 3115458 ~ 3120099 (-) False G324936
TU369369 other upstream 207239 3115458 ~ 3120099 (-) False G324936
TU369366 other upstream 207932 3116151 ~ 3120099 (-) True G324936

Expression Profile