RNA id: TU368313


Basic Information

Item Value
RNA id TU368313
length 503
lncRNA type inter_gene
GC content 0.48
exon number 4
gene id G323946
representative False

Chromosome Information

Item Value
chromosome id CI01000110
NCBI id null
chromosome length 4324856
location 2233196 ~ 2308545 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAACTCGCGGGGTTTCTTCATTCTACATAAAGTTCGCAGTGGGGAAAATTAAGCGAGTTTTCTGATTTTTCATCTCCCTCTTTTCAGGTTGACGTAAAAGAAGAAATTCTGACAGCCCACATCTTGAGATCTGGCAGATGGCTGCTACACAGGAAAGCTGTCACAAGGTCAGAAGGTCTCTTCCTGTCTACGTGGGAGGTTCTTGGCCATAATAAGCAGCAGAGGACCAGACTTTCTGTCAACAGTAAAAAGTCTGCTGCTGAGGCCAGCACCAGAGGAAAACCCAGCGCACAGTCTCCTCTCTCTCTCTCTCGCTTCTTCAACGGACTGAAGAGATCTCCTGCTGGACACCTGCCCTGCACCCCAGCCAAGTGCTCATCTAGAGGAGAGAAAAGGACTCTTTCCCCACTAAGAGTCAAACTAACCAGGCAAGTTTGTCATCGGTCCATCATTCAATGCAGAAGACATCGATTGCAACTTTAGCACCCTCAGGACTTTCTACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU368354 lncRNA downstream 26747 2203711 ~ 2206449 (-) True G323987
TU368352 lncRNA downstream 31784 2201085 ~ 2201412 (-) True G323985
TU368350 lncRNA downstream 38369 2194568 ~ 2194827 (-) True G323983
TU368342 lncRNA downstream 48304 2184655 ~ 2184892 (-) True G323975
TU368336 lncRNA downstream 62213 2170762 ~ 2170983 (-) True G323969
TU368404 lncRNA upstream 35331 2343876 ~ 2344209 (-) True G324034
TU368473 lncRNA upstream 122140 2430685 ~ 2430913 (-) True G324103
TU368488 lncRNA upstream 143730 2452275 ~ 2452639 (-) True G324118
TU368512 lncRNA upstream 169442 2477987 ~ 2478194 (-) True G324142
TU369164 lncRNA upstream 355642 2664187 ~ 2712243 (-) True G324755
CI01000110_01988105_01990600.mRNA mRNA downstream 241455 1986589 ~ 1991741 (-) True CI01000110_01988105_01990600
CI01000110_01864492_01865547.mRNA mRNA downstream 367649 1864478 ~ 1865547 (-) True CI01000110_01864492_01865547
CI01000110_01436253_01450759.mRNA mRNA downstream 782437 1436205 ~ 1450759 (-) True CI01000110_01436253_01450759
CI01000110_01432049_01434499.mRNA mRNA downstream 798697 1431705 ~ 1434499 (-) True CI01000110_01432049_01434499
CI01000110_01422600_01428949.mRNA mRNA downstream 804247 1421893 ~ 1428949 (-) False CI01000110_01422600_01428949
CI01000110_02794268_02794597.mRNA mRNA upstream 485637 2794182 ~ 2794597 (-) True CI01000110_02794268_02794597
CI01000110_02890041_02906679.mRNA mRNA upstream 581415 2889960 ~ 2908219 (-) False CI01000110_02890041_02906679
CI01000110_03015589_03024689.mRNA mRNA upstream 706705 3015250 ~ 3025361 (-) True CI01000110_03015589_03024689
CI01000110_03084686_03087106.mRNA mRNA upstream 775894 3084439 ~ 3087106 (-) True CI01000110_03084686_03087106
CI01000110_03095980_03103572.mRNA mRNA upstream 786911 3095456 ~ 3103572 (-) True CI01000110_03095980_03103572
TU367430 other downstream 996347 1205829 ~ 1236849 (-) True G323133
TU367428 other downstream 1018806 1205829 ~ 1214390 (-) False G323133
TU366784 other downstream 2127377 103265 ~ 105819 (-) True G322580
TU369365 other upstream 806913 3115458 ~ 3120099 (-) False G324936
TU369369 other upstream 806913 3115458 ~ 3120099 (-) False G324936
TU369366 other upstream 807606 3116151 ~ 3120099 (-) True G324936

Expression Profile