RNA id: TU369459


Basic Information

Item Value
RNA id TU369459
length 364
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G325019
representative True

Chromosome Information

Item Value
chromosome id CI01000110
NCBI id null
chromosome length 4324856
location 3143516 ~ 3143879 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGACAAAGCAGAACTGTTCGTCTCCACGCAACACACAGCAGTGTTTCATTTCTGAATCTGCGTTTTGAATGTAACAAAAGTGATTCAGCGGACCATTCATAAAAGACTTGAAGCGGCGCTACACGCAGACCGACCGGTGTATGACACCAAAGACTTACAGTGATATAGGTTACGCTTACCAATTTCTTGTTATCCACATGGACATCGATGTCCTCATTTTAAGACACTGTTTTTCATTTTCATTTTCTTTTTTGCGTTTTCTGTTTTCTGTTCTGCGCCCCAGAAACGCTTCCCTCCTCTGTCCATTTTGGACATGTGACTTTCCGTAACAGAGCAACGGCTCTTGTCGAAATGGTGAGCAGTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU369453 lncRNA downstream 17670 3125408 ~ 3125846 (-) True G325013
TU369370 lncRNA downstream 23417 3115458 ~ 3120099 (-) False G324936
TU369460 lncRNA upstream 53 3143932 ~ 3144335 (-) True G325020
TU369414 lncRNA upstream 3641 3147520 ~ 3200136 (-) True G324978
TU369487 lncRNA upstream 114829 3258708 ~ 3258939 (-) True G325046
TU369488 lncRNA upstream 115109 3258988 ~ 3259209 (-) True G325047
TU369402 lncRNA upstream 135168 3279047 ~ 3279429 (-) True G324966
CI01000110_03138199_03142034.mRNA mRNA downstream 1162 3137280 ~ 3142354 (-) True CI01000110_03138199_03142034
CI01000110_03122088_03123095.mRNA mRNA downstream 20421 3121663 ~ 3123095 (-) True CI01000110_03122088_03123095
CI01000110_03095980_03103572.mRNA mRNA downstream 39944 3095456 ~ 3103572 (-) True CI01000110_03095980_03103572
CI01000110_03084686_03087106.mRNA mRNA downstream 56410 3084439 ~ 3087106 (-) True CI01000110_03084686_03087106
CI01000110_03015589_03024689.mRNA mRNA downstream 118155 3015250 ~ 3025361 (-) True CI01000110_03015589_03024689
CI01000110_03152754_03157924.mRNA mRNA upstream 8586 3152465 ~ 3157924 (-) True CI01000110_03152754_03157924
CI01000110_03196898_03206968.mRNA mRNA upstream 52303 3196182 ~ 3206968 (-) True CI01000110_03196898_03206968
CI01000110_03220300_03222003.mRNA mRNA upstream 75941 3219820 ~ 3222003 (-) True CI01000110_03220300_03222003
CI01000110_03281209_03283417.mRNA mRNA upstream 135883 3279762 ~ 3283849 (-) True CI01000110_03281209_03283417
CI01000110_03438821_03442595.mRNA mRNA upstream 294894 3438773 ~ 3442661 (-) True CI01000110_03438821_03442595
TU369365 other downstream 23417 3115458 ~ 3120099 (-) False G324936
TU369369 other downstream 23417 3115458 ~ 3120099 (-) False G324936
TU369366 other downstream 23417 3116151 ~ 3120099 (-) True G324936
TU367430 other downstream 1906667 1205829 ~ 1236849 (-) True G323133
TU367428 other downstream 1929126 1205829 ~ 1214390 (-) False G323133

Expression Profile