RNA id: TCONS_00003285


Basic Information

Item Value
RNA id TCONS_00003285
length 482
lncRNA type read_through
GC content 0.53
exon number 3
gene id XLOC_000907
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 108285 ~ 147846 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATGAAGTGGGAGGAGTCAATTAGCCCGCGCTCAGTTGTGGCGCGCATGTTTCGCGGGCATTCGGTCATAATCAACATCAGTGATCGTAATGAAGCGTAATTAAAGACAAAAACATGACGACGGACTTTCTGAAACCAGTTAACCTTTCATCAGGATACCCGATTAAAACACCATTCCTGCGCTTCTGCTCCTGCCATCGCTGGTCGGGGACGGTGAAGATCTCTCTGGCCTCCTCATATGAGCAGATCTCCTCCAGACACTCGCGCTCCAGATCTCCCAGCTTCAGCTCCTCCAGGAAAGAGTTCGCCCTGCGCACACGCGGATGCAGCGGCCGGTTCGCCTCTGCACGACTCAAGAACACTGCAGatcatggacacacacacacacacacacacacacacacacacaccggatgAAGAagacacagGGTCTCTGATATTGCAGGCAGACGCTGAACTGCAGAGTCTTTCCTCTTTCTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001433 lncRNA downstream 36791 65705 ~ 71494 (-) False XLOC_000906
TCONS_00001438 lncRNA downstream 36813 67890 ~ 71472 (-) True XLOC_000906
TCONS_00003284 lncRNA downstream 58443 47420 ~ 49842 (-) False XLOC_000904
TCONS_00001430 lncRNA downstream 58443 48877 ~ 49842 (-) True XLOC_000904
TCONS_00001428 lncRNA downstream 58590 47820 ~ 49695 (-) False XLOC_000904
TCONS_00003287 lncRNA upstream 5392 153238 ~ 157554 (-) False XLOC_000909
TCONS_00001443 lncRNA upstream 5797 153643 ~ 157554 (-) False XLOC_000909
TCONS_00001444 lncRNA upstream 6240 154086 ~ 154808 (-) False XLOC_000909
TCONS_00003288 lncRNA upstream 6240 154086 ~ 157531 (-) False XLOC_000909
TCONS_00001445 lncRNA upstream 6767 154613 ~ 157531 (-) False XLOC_000909
TCONS_00001435 mRNA downstream 36762 65705 ~ 71523 (-) False XLOC_000906
TCONS_00001434 mRNA downstream 36762 65705 ~ 71523 (-) False XLOC_000906
TCONS_00001437 mRNA downstream 36815 67887 ~ 71470 (-) False XLOC_000906
TCONS_00001436 mRNA downstream 38841 66283 ~ 69444 (-) False XLOC_000906
TCONS_00001432 mRNA downstream 43268 60987 ~ 65017 (-) True XLOC_000905
TCONS_00001440 mRNA upstream 4161 152007 ~ 157563 (-) False XLOC_000909
TCONS_00001441 mRNA upstream 4470 152316 ~ 156375 (-) False XLOC_000909
TCONS_00001447 mRNA upstream 12456 160302 ~ 201004 (-) False XLOC_000910
TCONS_00001448 mRNA upstream 37069 184915 ~ 191971 (-) False XLOC_000911
TCONS_00001449 mRNA upstream 37070 184916 ~ 192033 (-) False XLOC_000911
TCONS_00001429 other downstream 58450 47954 ~ 49835 (-) False XLOC_000904
TCONS_00001421 other downstream 63739 42204 ~ 44546 (-) False XLOC_000903
TCONS_00001442 other upstream 5392 153238 ~ 153846 (-) False XLOC_000909
TCONS_00001460 other upstream 319897 467743 ~ 471925 (-) True XLOC_000917
TCONS_00001476 other upstream 473179 621025 ~ 625080 (-) False XLOC_000923
TCONS_00001485 other upstream 903095 1050941 ~ 1051057 (-) True XLOC_000930
TCONS_00001486 other upstream 1165759 1313605 ~ 1315753 (-) True XLOC_000932

Expression Profile

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