RNA id: TCONS_00003286


Basic Information

Item Value
RNA id TCONS_00003286
length 632
lncRNA type antisense_over
GC content 0.35
exon number 2
gene id XLOC_000908
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 141289 ~ 142119 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGAAGCATTGATGAACCATTCTACCTCCATAATGTGATTTTACTAGAAATACCATGATATTAATACACATGAGGATTACACTAAAgccacagttcacccaaaaatctacaTTTACCCACTATTTACTGCCAAacatttaagagtttctttcttcttttaaacacaaaagaaaatattctaaAGAAAGCCAAAAGCCTGTAGCCATTGTAATGAAATccgattaaaattaaaatattcataattaaattGCAACttgttatcattaattattaatattcatactTTTAAGTTACACCACTGACCTCCATAGTAAGAATAAAAACCAATAGATAAAGgtgttcaacattcttcagaacttcttcttttgttttataaCAGAAAACTAGAAGCTGGTAAAGGACGAgtaacttttgggtgaactctcccttaaAGCACAGGTAATTAAATGCATATGAAAGATGAGGCTTTCCTCAGAGGAGTCAGACTCTTCTTATTGGTGTCTTGTGCCGCAGCTCTCGCTTTGCTTTGGGTTTTAAAGACGCTCCGGTCTCTGGCATGACTTTCGTCATTGCGTTATTGATCCACATGATGTATTTGGAGACCTGTGTGTAGACGCCGTATTTCCCCTTGCG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001439 lncRNA downstream 30485 108285 ~ 110804 (-) False XLOC_000907
TCONS_00001433 lncRNA downstream 69795 65705 ~ 71494 (-) False XLOC_000906
TCONS_00001438 lncRNA downstream 69817 67890 ~ 71472 (-) True XLOC_000906
TCONS_00003284 lncRNA downstream 91447 47420 ~ 49842 (-) False XLOC_000904
TCONS_00001430 lncRNA downstream 91447 48877 ~ 49842 (-) True XLOC_000904
TCONS_00003287 lncRNA upstream 11119 153238 ~ 157554 (-) False XLOC_000909
TCONS_00001443 lncRNA upstream 11524 153643 ~ 157554 (-) False XLOC_000909
TCONS_00001444 lncRNA upstream 11967 154086 ~ 154808 (-) False XLOC_000909
TCONS_00003288 lncRNA upstream 11967 154086 ~ 157531 (-) False XLOC_000909
TCONS_00001445 lncRNA upstream 12494 154613 ~ 157531 (-) False XLOC_000909
TCONS_00001435 mRNA downstream 69766 65705 ~ 71523 (-) False XLOC_000906
TCONS_00001434 mRNA downstream 69766 65705 ~ 71523 (-) False XLOC_000906
TCONS_00001437 mRNA downstream 69819 67887 ~ 71470 (-) False XLOC_000906
TCONS_00001436 mRNA downstream 71845 66283 ~ 69444 (-) False XLOC_000906
TCONS_00001432 mRNA downstream 76272 60987 ~ 65017 (-) True XLOC_000905
TCONS_00001440 mRNA upstream 9888 152007 ~ 157563 (-) False XLOC_000909
TCONS_00001441 mRNA upstream 10197 152316 ~ 156375 (-) False XLOC_000909
TCONS_00001447 mRNA upstream 18183 160302 ~ 201004 (-) False XLOC_000910
TCONS_00001448 mRNA upstream 42796 184915 ~ 191971 (-) False XLOC_000911
TCONS_00001449 mRNA upstream 42797 184916 ~ 192033 (-) False XLOC_000911
TCONS_00001429 other downstream 91454 47954 ~ 49835 (-) False XLOC_000904
TCONS_00001421 other downstream 96743 42204 ~ 44546 (-) False XLOC_000903
TCONS_00001442 other upstream 11119 153238 ~ 153846 (-) False XLOC_000909
TCONS_00001460 other upstream 325624 467743 ~ 471925 (-) True XLOC_000917
TCONS_00001476 other upstream 478906 621025 ~ 625080 (-) False XLOC_000923
TCONS_00001485 other upstream 908822 1050941 ~ 1051057 (-) True XLOC_000930
TCONS_00001486 other upstream 1171486 1313605 ~ 1315753 (-) True XLOC_000932

Expression Profile

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