RNA id: TU377096


Basic Information

Item Value
RNA id TU377096
length 233
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G331746
representative True

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 1601376 ~ 1601608 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCAGTGGAGTGTTGAGTAAAGTTTTAATCTTTTCTCAAAATCTTTTCTATTTCATTTAAAGGGTTTGTTCTCCCAAAAATGAAAATTCTGTCATTAATTACTCTTCCTCATGTCGTTCCAAACCCATAAAACTTTCGTTCATCTTTGGAACACAAATTAAGATATTTTTGATGAAATCTGAGAGATTTCTGTCCCTCCACTGACAGCTACACAACTGCCATTTTAAGGCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU377094 lncRNA upstream 15012 1585970 ~ 1586364 (+) False G331744
TU377093 lncRNA upstream 15049 1585698 ~ 1586327 (+) False G331744
TU377091 lncRNA upstream 15049 1585970 ~ 1586327 (+) False G331744
TU377092 lncRNA upstream 15049 1586033 ~ 1586327 (+) True G331744
TU377084 lncRNA upstream 33169 1567829 ~ 1568207 (+) True G331737
TU377097 lncRNA downstream 7613 1609221 ~ 1609426 (+) True G331747
TU377110 lncRNA downstream 34543 1636151 ~ 1636660 (+) True G331755
TU377120 lncRNA downstream 36510 1638118 ~ 1638433 (+) True G331756
TU377187 lncRNA downstream 132066 1733674 ~ 1781690 (+) True G331790
TU377190 lncRNA downstream 153849 1755457 ~ 1756978 (+) True G331793
CI01000113_01547153_01553082.mRNA mRNA upstream 47590 1546736 ~ 1553786 (+) True CI01000113_01547153_01553082
CI01000113_01530888_01533572.mRNA mRNA upstream 67804 1530791 ~ 1533572 (+) True CI01000113_01530888_01533572
CI01000113_01515238_01529826.mRNA mRNA upstream 71425 1515171 ~ 1529951 (+) True CI01000113_01515238_01529826
CI01000113_01510550_01513751.mRNA mRNA upstream 87170 1510550 ~ 1514206 (+) True CI01000113_01510550_01513751
CI01000113_01507537_01509522.mRNA mRNA upstream 91854 1507537 ~ 1509522 (+) True CI01000113_01507537_01509522
CI01000113_01666106_01684663.mRNA mRNA downstream 64458 1666066 ~ 1684701 (+) False CI01000113_01666106_01684663
CI01000113_01691097_01696776.mRNA mRNA downstream 89489 1691097 ~ 1696776 (+) False CI01000113_01691097_01696776
CI01000113_01698764_01709585.mRNA mRNA downstream 97016 1698624 ~ 1709708 (+) True CI01000113_01698764_01709585
CI01000113_01716646_01752755.mRNA mRNA downstream 114141 1715749 ~ 1753351 (+) True CI01000113_01716646_01752755
CI01000113_01761054_01815819.mRNA mRNA downstream 159319 1760927 ~ 1815997 (+) False CI01000113_01761054_01815819
TU376908 other upstream 175670 1424561 ~ 1425441 (+) True G331578
TU376961 other upstream 354803 1246291 ~ 1246573 (+) True G331615
TU376797 other upstream 679243 917735 ~ 922133 (+) True G331487
TU376780 other upstream 684839 913392 ~ 916537 (+) True G331470
TU376556 other upstream 1266755 334158 ~ 334621 (+) True G331260
TU377162 other downstream 61177 1662785 ~ 1663255 (+) True G331767
TU377129 other downstream 66394 1668002 ~ 1668035 (+) True G331759
TU377145 other downstream 66394 1668002 ~ 1782301 (+) True G331759
TU377135 other downstream 224549 1828809 ~ 1828903 (+) True G331759
TU377377 other downstream 741813 2351665 ~ 2351870 (+) True G331958

Expression Profile