RNA id: TCONS_00001455


Basic Information

Item Value
RNA id TCONS_00001455
length 538
RNA type mRNA
GC content 0.55
exon number 5
gene id XLOC_000914
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 343292 ~ 354166 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGGTTAACCCACACACACGCCGGCCAGGCATGAGCTCTGTCTGCCAGAAACACTAGAGGAAAGTCAACAGGAAAAGCGAGTGTTTGGATCCGAGACACCGAAGCGGAAGCGACTGGAACTTCAGCGGGACATGAGGAGTCTGAAGGCGGCGTGCAGCGGCTCGGAGCTcggcctgctgctgctgctgctgtccgCTACACTCTGCGGCTCTCAGCGCTttcttCCTCAGAGTAAAGCGTCAGAGTTCCTGCTGCGTCACAGACGGGCGAACACACTCTTTGAGGAGAGTAAGAAAGGAAACCTGGAGCGCGAGTGTATCGAGGAGCTCTGCAATAAAGAGGAGGCGCGCGAGATCTTCGAGAACAACCTGGAGACGGAATATTTCTACCCCAGtgtgTTTAGGTTCTCACCGTGTGGGCATCAATAATCCGGAGCCGGGCATTCCTCAGAATCTGCGCACGTGTGTTGAAGagatcAGTAATCAGTGTTTGCCGCCACCGTGTTATAAAGAAGGCTCCGAGCGCTGTGTGGATGGCCA

Function

GO:

id name namespace
GO:0030195 negative regulation of blood coagulation biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades

ZFIN:

id description
ZDB-GENE-061013-657 Predicted to enable calcium ion binding activity. Predicted to act upstream of or within blood coagulation and fibrinolysis. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in hypochord. Human ortholog(s) of this gene implicated in autosomal dominant thrombophilia due to protein S deficiency; autosomal recessive thrombophilia due to protein S deficiency; cerebral infarction; and protein S deficiency. Orthologous to human PROS1 (protein S).

Ensembl:

ensembl_id ENSDART00000141590

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001454 lncRNA downstream 4945 343617 ~ 345895 (-) False XLOC_000914
TCONS_00002896 lncRNA downstream 140027 209129 ~ 210813 (-) True XLOC_000912
TCONS_00002895 lncRNA downstream 149646 199526 ~ 201194 (-) False XLOC_000910
TCONS_00002894 lncRNA downstream 158855 189734 ~ 191985 (-) True XLOC_000911
TCONS_00001446 lncRNA downstream 193307 155770 ~ 157533 (-) True XLOC_000909
TCONS_00001463 lncRNA upstream 125692 479807 ~ 484588 (-) False XLOC_000918
TCONS_00001467 lncRNA upstream 157656 511771 ~ 513717 (-) True XLOC_000919
TCONS_00001475 lncRNA upstream 266875 620990 ~ 622179 (-) False XLOC_000923
TCONS_00003289 lncRNA upstream 424460 778575 ~ 779614 (-) True XLOC_000927
TCONS_00003290 lncRNA upstream 651822 1005937 ~ 1014866 (-) True XLOC_000929
TCONS_00001452 mRNA downstream 12395 312784 ~ 338445 (-) True XLOC_000913
TCONS_00001451 mRNA downstream 135929 208181 ~ 214911 (-) False XLOC_000912
TCONS_00001450 mRNA downstream 144632 200294 ~ 206208 (-) True XLOC_000910
TCONS_00001449 mRNA downstream 158807 184916 ~ 192033 (-) False XLOC_000911
TCONS_00001448 mRNA downstream 158869 184915 ~ 191971 (-) False XLOC_000911
TCONS_00001456 mRNA upstream 3403 357518 ~ 411331 (-) True XLOC_000915
TCONS_00001457 mRNA upstream 100200 454315 ~ 462165 (-) True XLOC_000916
TCONS_00001458 mRNA upstream 112665 466780 ~ 470812 (-) False XLOC_000917
TCONS_00001459 mRNA upstream 112665 466780 ~ 471925 (-) False XLOC_000917
TCONS_00001461 mRNA upstream 119970 474085 ~ 494280 (-) False XLOC_000918
TCONS_00001442 other downstream 196994 153238 ~ 153846 (-) False XLOC_000909
TCONS_00001429 other downstream 301005 47954 ~ 49835 (-) False XLOC_000904
TCONS_00001421 other downstream 306294 42204 ~ 44546 (-) False XLOC_000903
TCONS_00001460 other upstream 113628 467743 ~ 471925 (-) True XLOC_000917
TCONS_00001476 other upstream 266910 621025 ~ 625080 (-) False XLOC_000923
TCONS_00001485 other upstream 696826 1050941 ~ 1051057 (-) True XLOC_000930
TCONS_00001486 other upstream 959490 1313605 ~ 1315753 (-) True XLOC_000932
TCONS_00001492 other upstream 1516746 1870861 ~ 1875118 (-) False XLOC_000939

Expression Profile

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