RNA id: TCONS_00001467


Basic Information

Item Value
RNA id TCONS_00001467
length 538
lncRNA type retained_intron
GC content 0.51
exon number 2
gene id XLOC_000919
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 508885 ~ 513786 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTGGCCAGCAGCTGATGTGGAACAGAGATTTACTTTAATTAAAGTGTAAATAATGTTGTAGGGGTTGAAGAGGACGGGGGTGGGCGTCACAGTGCTGATTTAATCTGATTTTCTTTCCCCAACACTGATGATGTTTCTGCGCTGGTGTTTCCCGCCGGTCAGAcggatgtgtgtgtgtcagcagatctCCGTCAGGTCCTTCAGCAGCAGCCGGACGCTCCTCAAAGATGACCCACAGCATGAGGAGAAGCTGGATCTGGACATCTGGAAGTCTGTGATGAGAGCTCAAGCTCTGCCGGAAGATCCTCCGCATCTCCAGGACTCGACATCGGCTGCGTCTGTGCTGGAGGCGCACCGAGAGCTGGTGGAGACCTGGCATCAAGCTGGAAAGGTGATGCTACACTTATTATAACCCTTAAATCCCCCTCAGATTGACTCCTCTTTGgtgatgttggtgctgtttttgccccattgacacacacatgcatgtatgtatgtatttctaCACGTATACCTCCACGTGTGCAGCTGGTGCCG

Function

GO:

id name namespace
GO:0090646 mitochondrial tRNA processing biological_process
GO:0008033 tRNA processing biological_process
GO:0030678 mitochondrial ribonuclease P complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0000049 tRNA binding molecular_function
GO:0009019 tRNA (guanine-N1-)-methyltransferase activity molecular_function

KEGG:

id description
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-041114-12 Predicted to enable tRNA (guanine-N1-)-methyltransferase activity and tRNA binding activity. Predicted to be involved in mitochondrial tRNA processing. Predicted to act upstream of or within methylation and tRNA processing. Predicted to be located in mitochondrial nucleoid. Predicted to be part of mitochondrial ribonuclease P complex. Predicted to be active in nucleoplasm. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 30. Orthologous to human TRMT10C (tRNA methyltransferase 10C, mitochondrial RNase P subunit).

Ensembl:

ensembl_id ENSDART00000138032

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001463 lncRNA downstream 27183 479807 ~ 484588 (-) False XLOC_000918
TCONS_00001454 lncRNA downstream 165876 343617 ~ 345895 (-) False XLOC_000914
TCONS_00002896 lncRNA downstream 300958 209129 ~ 210813 (-) True XLOC_000912
TCONS_00002895 lncRNA downstream 310577 199526 ~ 201194 (-) False XLOC_000910
TCONS_00002894 lncRNA downstream 319786 189734 ~ 191985 (-) True XLOC_000911
TCONS_00001475 lncRNA upstream 107273 620990 ~ 622179 (-) False XLOC_000923
TCONS_00003289 lncRNA upstream 264858 778575 ~ 779614 (-) True XLOC_000927
TCONS_00003290 lncRNA upstream 492220 1005937 ~ 1014866 (-) True XLOC_000929
TCONS_00002897 lncRNA upstream 630245 1143962 ~ 1253194 (-) True XLOC_000931
TCONS_00003292 lncRNA upstream 777458 1291175 ~ 1314969 (-) False XLOC_000932
TCONS_00001461 mRNA downstream 17491 474085 ~ 494280 (-) False XLOC_000918
TCONS_00001464 mRNA downstream 18553 487189 ~ 493218 (-) True XLOC_000918
TCONS_00001462 mRNA downstream 29930 474287 ~ 481841 (-) False XLOC_000918
TCONS_00001459 mRNA downstream 39846 466780 ~ 471925 (-) False XLOC_000917
TCONS_00001458 mRNA downstream 40959 466780 ~ 470812 (-) False XLOC_000917
TCONS_00001468 mRNA upstream 5136 518853 ~ 524433 (-) True XLOC_000920
TCONS_00001469 mRNA upstream 38558 552275 ~ 558260 (-) True XLOC_000921
TCONS_00001470 mRNA upstream 96365 610082 ~ 614638 (-) False XLOC_000922
TCONS_00001471 mRNA upstream 96610 610327 ~ 614583 (-) False XLOC_000922
TCONS_00001472 mRNA upstream 96972 610689 ~ 614592 (-) False XLOC_000922
TCONS_00001460 other downstream 39846 467743 ~ 471925 (-) True XLOC_000917
TCONS_00001442 other downstream 357925 153238 ~ 153846 (-) False XLOC_000909
TCONS_00001429 other downstream 461936 47954 ~ 49835 (-) False XLOC_000904
TCONS_00001421 other downstream 467225 42204 ~ 44546 (-) False XLOC_000903
TCONS_00001476 other upstream 107308 621025 ~ 625080 (-) False XLOC_000923
TCONS_00001485 other upstream 537224 1050941 ~ 1051057 (-) True XLOC_000930
TCONS_00001486 other upstream 799888 1313605 ~ 1315753 (-) True XLOC_000932
TCONS_00001492 other upstream 1357144 1870861 ~ 1875118 (-) False XLOC_000939
TCONS_00001493 other upstream 1360291 1874008 ~ 1885600 (-) False XLOC_000939

Expression Profile

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