RNA id: TCONS_00001480


Basic Information

Item Value
RNA id TCONS_00001480
length 2928
RNA type mRNA
GC content 0.46
exon number 4
gene id XLOC_000924
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 658405 ~ 669717 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCAGACAAAGAGGAAGAGCTGGACACGTGCAGCCCTTAGAGGATATGCGGGAACTTTTCTGACTCTCTGAACTGTTGCTTTCGACTGCAGTCATGGCTGAGGTATCGATGCACTGCGGGAAGAGGAAGAAGTAGCGCGGGAAAGAGTGTTTAGATGCGGAGTTTTCCTGAAATAAGCGGATTATGGAGAATCCCAGAAGTGCGAGTTTACAGAAGAGCTGGAAGTTCGTGCGGGAGTCGCTGCTGCTCTGCTTAATCGCCGgtcgtGGAGAGGCTCAGTGTGACGGCTGTATTGAGTACTGCTGTGATGGAGTTCCTCCGTTCTGCTGCTCATATTATGCTTATGTGGGAGATGTGCTGTcAGGAACGGCTATCTCCGGGATCGTGTTCGGTGTTGTGTTTCTGATGGGAGCAGTGGCCGCTGTGTTTCTGTGCGTCTGCATGTGTGTGAAGAACAGCCGCGGGTCCAGAGTCGGAGTTTTCAGTTCCACATACATCAACACAGTGACTCAGGGTTACCCAGgtcctcctcctcctccttacAGTTATGATCATGAGATGTTTCCTCCTGATCTCCGTCCTCCTCCATACACACCCACTGTTCCCAGATCAGCAAACTACTCTCCACCTCCACCATACCCTGGATTCAGCAGGAAGTGACCATGACCATTTCCAGACCTGAGGCCAGACGCTGacctgctgcacacacacacacacacacacacacattaatgcaGTGCACATGTAGGCTGTAATAATAGCCATACATTAGCAGTTTTACCCAGTTTGTGATTAATTTTTtccaatttattcatgtttttgagttgcattatgggatcttgatctttcttctgacGACTGTTAAGCCTAAATAGTTGCAAAAAGTGGGTTTTCTGACCATTTGTAATAgtctgcagtgctatattgtctatgattgagctttatgacatgctgcgttatcctgctggaagtagccatcagaagatggagacactgtgctcataaagggatggacatggtcagcagcaatactcaggtaggctgtggcgttgatgctcaattggtactaatggacccaaagaaaatctcccccacaccattacaccaccaccaccagcctgaaccgctgatacaaggcaggatgatccatgctttcatgttgttgatgccaaattctgacccgagcatccgacagcagaaatggagactcatcagagcagcaacgtttctccaatcttctattgtccagttttggtgagtctgtgtgaattgtagcctcagtttcctgttcttagctgacaggagcggcacccggtgtgctcttctgctgctgtagcccatccgcctcaaggttggccgtgttgtgtgttcagagatgctcttctgcagagctcggttgtaacgagtgcttatttgagttactgttgcctttctatcagctggaaccagtctggccattctcctctgacctctgaccatcaacaaggcatttgcgcccacagaactgccgctcactggatatttcctctttgtcggagcattctctgtaaaccctagagatggttgtgcgtgaaaatcccagtagatcagcagtttctgaaatactcagagcagcccgtctggcagcaacaaccatgccacgttcagagtctcttaaatcccctttcttccccattctgatgctcgctctgaactgcagcagatcctcttgaccatgtctacatgcctaaatgcagtgagctgctgccatgtgattggctgattagacatttgcattaacagcagttggactggtgtacctaataaagtggccggtgagtgtatttctctatatattatgtCTTATATATTATTACTCAATGactaaatgtcagtaaaagtcactttgttaaactgtagagttgaattttcaacatcagaagtggacagagcagagataagcatcccataatgcaaatcaccaccacacataaacacaaaatatggaaattGTCTTATATTGACAGTGTGCATTCTGGGAAATGCAGTAGACTCTGTGttaggggtctggctgcagacctggtgcagtgcaatctgagctgcatccaatgctttttattgggctcacctaactccacccctaaccctacccgtcacagtgacgtcactcgctccattaagtgcattgtgtctgagaatgcatcgctgagtgatgcaatttcAGCGTGCATCGTacaggctgcatccagatactattgggaaATGCAGTAGACTCTGTGTAGACTCAGTGTTATTTCTGTCATGATCAATGAAATGTGTATATAGATTAACATTATGTTCTTGTGTTTCTGTCCGAGTGGTTTCTGCTCTGGAAATAATTCGCTTTATTAAtgcagaaaatgtatttattcgcTTGCATATTTGTTTGGAAGCTCTAATATCAGTGTTTTTATAGTGTGCAGATTTGTCTTTGTATTTGTGAGcagtaaaattaaaacaaagggtggcacggtggctcagtggttagcactgtggcctcacagcaagaagctcgctggttcgagtcccggctggaccagttggcatttctgtgtggagtttgcatgttctccccgtgttggcgtgggtttccgccgggtgctccggttacagtccaagcacatgtgctataggggaattgatcaactcaattggccgcagtgtatgagtgtgtgtgtgtatgcatgcgtgcgtgtttcccagtactgggttgtggctagaagggcatctgctaaataaaacacatgctggactagttggcagttcattccgctgtggtgaactctaatgaataagggactaagccaaatgaaaacaAGCAAATGTGGTTGACCTGTTTTTAAAACTTGTGCTCAAAtagtaaagcatctgtttttgaattttaataataataaaactgaaatcTCCTTTC

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2356 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including female organism; head; lateral line system; male organism; and pectoral fin. Orthologous to human CYYR1 (cysteine and tyrosine rich 1).

Ensembl:

ensembl_id ENSDART00000160564

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001475 lncRNA downstream 36226 620990 ~ 622179 (-) False XLOC_000923
TCONS_00001467 lncRNA downstream 144688 511771 ~ 513717 (-) True XLOC_000919
TCONS_00001463 lncRNA downstream 173817 479807 ~ 484588 (-) False XLOC_000918
TCONS_00001454 lncRNA downstream 312510 343617 ~ 345895 (-) False XLOC_000914
TCONS_00002896 lncRNA downstream 447592 209129 ~ 210813 (-) True XLOC_000912
TCONS_00003289 lncRNA upstream 108858 778575 ~ 779614 (-) True XLOC_000927
TCONS_00003290 lncRNA upstream 336220 1005937 ~ 1014866 (-) True XLOC_000929
TCONS_00002897 lncRNA upstream 474245 1143962 ~ 1253194 (-) True XLOC_000931
TCONS_00003292 lncRNA upstream 621458 1291175 ~ 1314969 (-) False XLOC_000932
TCONS_00003291 lncRNA upstream 621458 1291175 ~ 1314969 (-) False XLOC_000932
TCONS_00001478 mRNA downstream 1712 621374 ~ 656693 (-) False XLOC_000923
TCONS_00001477 mRNA downstream 1712 621374 ~ 656693 (-) False XLOC_000923
TCONS_00001479 mRNA downstream 25049 626550 ~ 633356 (-) True XLOC_000923
TCONS_00001474 mRNA downstream 32530 617620 ~ 625875 (-) False XLOC_000923
TCONS_00001470 mRNA downstream 43767 610082 ~ 614638 (-) False XLOC_000922
TCONS_00001481 mRNA upstream 3446 673163 ~ 681116 (-) True XLOC_000925
TCONS_00001482 mRNA upstream 22021 691738 ~ 714626 (-) True XLOC_000926
TCONS_00001483 mRNA upstream 290492 960209 ~ 999556 (-) False XLOC_000928
TCONS_00001484 mRNA upstream 303750 973467 ~ 999556 (-) True XLOC_000928
TCONS_00001489 mRNA upstream 693215 1362932 ~ 1402303 (-) True XLOC_000934
TCONS_00001476 other downstream 33325 621025 ~ 625080 (-) False XLOC_000923
TCONS_00001460 other downstream 186480 467743 ~ 471925 (-) True XLOC_000917
TCONS_00001442 other downstream 504559 153238 ~ 153846 (-) False XLOC_000909
TCONS_00001429 other downstream 608570 47954 ~ 49835 (-) False XLOC_000904
TCONS_00001421 other downstream 613859 42204 ~ 44546 (-) False XLOC_000903
TCONS_00001485 other upstream 381224 1050941 ~ 1051057 (-) True XLOC_000930
TCONS_00001486 other upstream 643888 1313605 ~ 1315753 (-) True XLOC_000932
TCONS_00001492 other upstream 1201144 1870861 ~ 1875118 (-) False XLOC_000939
TCONS_00001493 other upstream 1204291 1874008 ~ 1885600 (-) False XLOC_000939
TCONS_00001497 other upstream 1214643 1884360 ~ 1928111 (-) False XLOC_000939

Expression Profile

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